Timeline
Nov 24, 2011:
- 3:48 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5888]) References #1630: Migrate from MySQL to PostgreSQL …
- 3:48 PM Changeset [5888] by
- References #1630: Migrate from MySQL to PostgreSQL Implemented some …
- 2:56 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- Here is some more detailed results from my testing. The test procedure …
- 1:43 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- Seems like there can be some time to save by not including a primary …
- 11:48 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- The import performance is not so good for large tables. A test …
Nov 23, 2011:
- 2:49 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5887]) References #1616: Clone reporter information to …
- 2:49 PM Changeset [5887] by
- References #1616: Clone reporter information to per-experiment tables …
- 2:32 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5886]) References #1616: Clone reporter information to …
- 2:32 PM Changeset [5886] by
- References #1616: Clone reporter information to per-experiment tables …
Nov 22, 2011:
- 4:17 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5885]) References #1616: Clone reporter information to …
- 4:17 PM Changeset [5885] by
- References #1616: Clone reporter information to per-experiment tables …
- 12:54 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5884]) References #1630: Migrate from MySQL to PostgreSQL …
- 12:54 PM Changeset [5884] by
- References #1630: Migrate from MySQL to PostgreSQL Updated …
- 12:00 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5883]) References #1630: Migrate from MySQL to PostgreSQL …
- 12:00 PM Changeset [5883] by
- References #1630: Migrate from MySQL to PostgreSQL Changed the export …
- 11:47 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5882]) References #1630: Migrate from MySQL to PostgreSQL Use …
- 11:47 AM Changeset [5882] by
- References #1630: Migrate from MySQL to PostgreSQL Use approximate …
Nov 21, 2011:
- 11:54 AM Ticket #1651 (Error handling problems when using PostgreSQL) closed by
- fixed: (In [5881]) Fixes #1651: Error handling problems when using PostgreSQL …
- 11:54 AM Changeset [5881] by
- Fixes #1651: Error handling problems when using PostgreSQL Adds the …
- 11:18 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5880]) References #1630: Migrate from MySQL to PostgreSQL More …
- 11:18 AM Changeset [5880] by
- References #1630: Migrate from MySQL to PostgreSQL More info in …
- 7:49 AM Ticket #1651 (Error handling problems when using PostgreSQL) updated by
-
Status, Owner changed
Nov 18, 2011:
- 3:02 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5879]) References #1616: Clone reporter information to …
- 3:02 PM Changeset [5879] by
- References #1616: Clone reporter information to per-experiment tables …
Nov 17, 2011:
- 2:59 PM Ticket #1651 (Error handling problems when using PostgreSQL) created by
- I have discovered an annoying "feature" in PostgreSQL that causes a …
- 12:41 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5878]) References #1616: Clone reporter information to …
- 12:41 PM Changeset [5878] by
- References #1616: Clone reporter information to per-experiment tables …
Nov 16, 2011:
- 3:39 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5877]) References #1616: Clone reporter information to …
- 3:39 PM Changeset [5877] by
- References #1616: Clone reporter information to per-experiment tables …
Nov 15, 2011:
- 2:45 PM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
- (In [5876]) References #1616: Clone reporter information to …
- 2:45 PM Changeset [5876] by
- References #1616: Clone reporter information to per-experiment tables …
Nov 14, 2011:
- 9:18 AM Ticket #1650 (Update 3rd-party JAR files) closed by
- fixed
- 9:00 AM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5875]) References #1650: Update 3rd-party JAR files Updated to …
- 9:00 AM Changeset [5875] by
- References #1650: Update 3rd-party JAR files Updated to Hibernate 3.6.8
Nov 11, 2011:
- 3:08 PM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5874]) References #1650: Update 3rd-party JAR files Added note …
- 3:08 PM Changeset [5874] by
- References #1650: Update 3rd-party JAR files Added note about …
- 2:58 PM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5873]) References #1650: Update 3rd-party JAR files Updated …
- 2:58 PM Changeset [5873] by
- References #1650: Update 3rd-party JAR files Updated commons-io to 1.4
- 1:07 PM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5872]) References #1650: Update 3rd-party JAR files Updated …
- 1:07 PM Changeset [5872] by
- References #1650: Update 3rd-party JAR files Updated Axis2 to 1.6.1. …
- 12:02 PM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5871]) References #1650: Update 3rd-party JAR files Updated …
- 12:02 PM Changeset [5871] by
- References #1650: Update 3rd-party JAR files Updated Ehcache to 2.4.6.
- 10:55 AM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5870]) References #1650: Update 3rd-party JAR files Updated …
- 10:55 AM Changeset [5870] by
- References #1650: Update 3rd-party JAR files Updated Apache …
- 10:33 AM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5869]) References #1650: Update 3rd-party JAR files Updated …
- 10:33 AM Changeset [5869] by
- References #1650: Update 3rd-party JAR files Updated MySQL JDBC …
- 9:55 AM Ticket #1650 (Update 3rd-party JAR files) updated by
- (In [5868]) References #1650: Update 3rd-party JAR files Updated JDOM …
- 9:55 AM Changeset [5868] by
- References #1650: Update 3rd-party JAR files Updated JDOM to 1.1.2 …
- 9:24 AM Ticket #1650 (Update 3rd-party JAR files) updated by
-
Status, Owner changed
- 9:24 AM Ticket #1650 (Update 3rd-party JAR files) created by
- Last time was more than a year ago #1513.
- 9:09 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5867]) References #1630: Migrate from MySQL to PostgreSQL Added …
- 9:09 AM Changeset [5867] by
- References #1630: Migrate from MySQL to PostgreSQL Added note about …
- 8:22 AM Tickets #1648,1613 batch updated by
- (In [5866]) References #1648 and #1613. Added a duplicate image …
- 8:22 AM Changeset [5866] by
- References #1648 and #1613. Added a duplicate image reference to a …
- 8:18 AM MinorReleaseTest edited by
- Added an 2.17->3.x upgrade test to the test protocol (diff)
Nov 10, 2011:
- 9:51 AM Ticket #1616 (Clone reporter information to per-experiment tables in the dynamic database) updated by
-
Status, Owner changed
- 9:42 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5865]) References #1630: Migrate from MySQL to PostgreSQL Added …
- 9:42 AM Changeset [5865] by
- References #1630: Migrate from MySQL to PostgreSQL Added instructions …
- 9:15 AM Changeset [5864] by
- Merged patch release 3.0.1 to the trunk.
- 8:57 AM Milestone BASE 3.0.1 completed
- Bug fixes for 3.0 Revision Log: log:branches/3.0-stable@5850:5862
- 8:57 AM DownloadPage edited by
- Releasing BASE 3.0.1 (diff)
- 8:50 AM Changeset [5863] by
- Changes for future release 3.0.2
- 8:43 AM Changeset [5862] by
- Tagging version 3.0.1
- 8:42 AM Changeset [5861] by
- Preparing release 3.0.1
- 8:41 AM Ticket #1649 (TestFile fails since files have been moved since the BASE 3 release) closed by
- fixed: (In [5860]) Fixes #1649: TestFile fails since files have been moved …
- 8:41 AM Changeset [5860] by
- Fixes #1649: TestFile fails since files have been moved since the BASE …
- 8:35 AM Ticket #1649 (TestFile fails since files have been moved since the BASE 3 release) created by
- […]
- 8:20 AM Ticket #1647 (Incorrect information in Chapter 3. Resources) closed by
- fixed
- 8:19 AM WikiStart edited by
- Fixes #1647 (diff)
- 8:12 AM Ticket #1647 (Incorrect information in Chapter 3. Resources) updated by
- (In [5859]) References #1647: Incorrect information in Chapter 3. Resources
- 8:12 AM Changeset [5859] by
- References #1647: Incorrect information in Chapter 3. Resources
Nov 9, 2011:
- 3:01 PM Ticket #1648 (Upgrading from BASE 2 to BASE 3 may create duplicate file set members) closed by
- fixed: (In [5858]) Fixes #1648: Upgrading from BASE 2 to BASE 3 may create …
- 3:01 PM Changeset [5858] by
- Fixes #1648: Upgrading from BASE 2 to BASE 3 may create duplicate file …
- 1:22 PM DownloadPage edited by
- Removing BASE 3.0 release due to #1648 (diff)
- 1:19 PM Ticket #1648 (Upgrading from BASE 2 to BASE 3 may create duplicate file set members) created by
-
The upgrade will move all existing
Image:s that has been added to a … - 12:52 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5857]) References #1630: Migrate from MySQL to PostgreSQL …
- 12:52 PM Changeset [5857] by
- References #1630: Migrate from MySQL to PostgreSQL Testing on the …
- 9:20 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5856]) References #1630: Migrate from MySQL to PostgreSQL …
- 9:20 AM Changeset [5856] by
- References #1630: Migrate from MySQL to PostgreSQL Documented the …
Nov 8, 2011:
- 4:04 PM Ticket #1647 (Incorrect information in Chapter 3. Resources) created by
- The "Roadmap" section at …
- 3:56 PM MinorReleaseTest edited by
- (#1630) Added instructions to test the migration program (diff)
- 3:42 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5855]) References #1630: Migrate from MySQL to PostgreSQL Using …
- 3:42 PM Changeset [5855] by
- References #1630: Migrate from MySQL to PostgreSQL Using a file to …
- 1:43 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5854]) References #1630: Migrate from MySQL to PostgreSQL The …
- 1:43 PM Changeset [5854] by
- References #1630: Migrate from MySQL to PostgreSQL The import step …
Nov 7, 2011:
- 2:50 PM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5853]) References #1630: Migrate from MySQL to PostgreSQL Forgot …
- 2:50 PM Changeset [5853] by
- References #1630: Migrate from MySQL to PostgreSQL Forgot to add the …
- 9:16 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
- (In [5852]) References #1630: Migrate from MySQL to PostgreSQL …
- 9:16 AM Changeset [5852] by
- References #1630: Migrate from MySQL to PostgreSQL Implemented the …
Nov 3, 2011:
- 10:05 AM Ticket #1630 (Migrate from MySQL to PostgreSQL) updated by
-
Status, Owner changed
Nov 2, 2011:
- 2:49 PM DownloadPage edited by
- Fixed incorrect link to 3.0.1 milestone (diff)
- 10:49 AM Milestone BASE 3.0 completed
- New major BASE version that will target support for sequencing …
- 10:44 AM BuildingBase edited by
- Fixing links (diff)
- 10:03 AM WikiStart edited by
- Fixing links (diff)
- 9:59 AM DeveloperInformation edited by
- Linking to the new documentation (diff)
- 9:50 AM DownloadPage edited by
- Moving older BASE 2.x version to their own download page (diff)
- 9:47 AM DownloadOld created by
- Create download page for older BASE versions
- 9:44 AM DownloadPage edited by
- Incorrect link to download files (diff)
- 9:43 AM DownloadPage edited by
- Releasing BASE 3.0 (diff)
- 9:32 AM Changeset [5851] by
- Changes for future release 3.0.1
- 9:16 AM Changeset [5850] by
- Tagging version 3.0
- 9:15 AM Changeset [5849] by
- Preparing release 3.0
- 8:39 AM Changeset [5848] by
- Changes for future release 3.1
- 8:37 AM Changeset [5847] by
- Forking 3.0-stable branch
Nov 1, 2011:
- 7:02 PM Ticket #523 (Write "Overview of BASE" section in Overview part) closed by
- fixed: (In [5846]) Fixes #523.
- 7:02 PM Changeset [5846] by
- Fixes #523.
- 5:58 PM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
- (In [5845]) Addresses #523.
- 5:58 PM Changeset [5845] by
- Addresses #523.
- 5:05 PM Ticket #522 (Write "Why use BASE" section) closed by
- fixed: (In [5844]) Fixes #522. After five years …
- 5:05 PM Changeset [5844] by
- Fixes #522. After five years …
- 3:46 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) closed by
- fixed: (In [5843]) Fixes #1646: Table exporter should use .csv and .xml file …
- 3:46 PM Changeset [5843] by
- Fixes #1646: Table exporter should use .csv and .xml file extensions …
- 3:37 PM Ticket #1637 (Test BASE with PostgreSQL 9) closed by
- fixed: (In [5842]) Fixes #1637: Test BASE with PostgreSQL 9 Documented that …
- 3:37 PM Changeset [5842] by
- Fixes #1637: Test BASE with PostgreSQL 9 Documented that we only …
- 3:35 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
-
Milestone changed
- 2:57 PM Ticket #1646 (Table exporter should use .csv and .xml file extensions when ...) created by
-
The current implementation give all files a
.txtextension which is … - 2:26 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
- Turns out that I have been using PostgreSQL 9.1.1 for more or less all …
- 2:13 PM Ticket #1637 (Test BASE with PostgreSQL 9) updated by
-
Status, Owner changed
- 2:11 PM Ticket #1636 (Test BASE with Tomcat 7) closed by
- fixed: (In [5841]) Fixes #1636: Test BASE with Tomcat 7 Updated …
- 2:11 PM Changeset [5841] by
- Fixes #1636: Test BASE with Tomcat 7 Updated documentation with …
- 1:39 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- The XJSP compiler still doesn't work: […] It seems like the …
- 1:28 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- (In [5840]) References #1636: Test BASE with Tomcat 7 Using a private …
- 1:28 PM Changeset [5840] by
- References #1636: Test BASE with Tomcat 7 Using a private logger …
- 1:20 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- The extensions system seems to be working fine, except for the XJSP …
- 1:12 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
-
Milestone changed
- 1:12 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- (In [5839]) References #1636: Test BASE with Tomcat 7 Fixes JSP …
- 1:12 PM Changeset [5839] by
- References #1636: Test BASE with Tomcat 7 Fixes JSP compilation problems.
- 1:02 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- There are four JSP files that can't be compiled (using the …
- 12:59 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
- It seems to be working fairly good. Tomcat is able to start and it is …
- 12:11 PM Ticket #1636 (Test BASE with Tomcat 7) updated by
-
Status, Owner changed
- 12:11 PM Ticket #1635 (Test BASE with Java 7) updated by
-
Milestone changed
- 12:10 PM Ticket #1635 (Test BASE with Java 7) closed by
- fixed: (In [5838]) Fixes #1635: Test BASE with Java 7 BASE itself seems to …
- 12:10 PM Changeset [5838] by
- Fixes #1635: Test BASE with Java 7 BASE itself seems to be working …
- 12:06 PM BuildingBase edited by
- Added information about compiling BASE with Java 7 (#1635) (diff)
- 9:31 AM Ticket #1618 (Improve "Reporter search" performance in experiment explorer) closed by
- fixed: Tested with some data from the production server. Except for the …
- 8:43 AM Ticket #1635 (Test BASE with Java 7) updated by
- Using BASE compiled with Java 1.6 seems to be working fine with Java …
- 8:24 AM Ticket #1635 (Test BASE with Java 7) updated by
- Compiling with 1.7 generates a warning: […] This is because the …
Oct 31, 2011:
- 2:57 PM Ticket #1635 (Test BASE with Java 7) updated by
-
Owner, Status changed
- 1:02 PM Ticket #1615 (Add test program in BASE 2.17 that create data that need special ...) closed by
- fixed
- 1:02 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) closed by
- fixed
- 1:02 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
-
Description changed
- 1:00 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5837]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 1:00 PM Changeset [5837] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Create a …
Oct 28, 2011:
- 11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) closed by
- fixed: (In [5836]) Fixes #1645: Enable sorting and filtering on free wells …
- 11:36 AM Changeset [5836] by
- Fixes #1645: Enable sorting and filtering on free wells column in …
- 11:36 AM Ticket #1645 (Enable sorting and filtering on free wells column in bioplate listing) created by
- This is mentioned in #1573, but was never implemented.
- 11:32 AM Ticket #1592 (Unified installation procedure for plug-ins, extensions and more...) updated by
- (In [5835]) References #1592: Unified installation procedure for …
- 11:32 AM Changeset [5835] by
- References #1592: Unified installation procedure for plug-ins, …
Oct 27, 2011:
- 2:53 PM Ticket #599 (Write "Appendix: migrate.properties reference") updated by
-
Milestone changed
- 2:52 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5834]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:52 PM Changeset [5834] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Added a short …
- 2:40 PM Ticket #1591 (Upgrade script for BASE 2.17 --> 3.0) updated by
- (In [5833]) References #1591: Upgrade script for BASE 2.17 --> 3.0 …
- 2:40 PM Changeset [5833] by
- References #1591: Upgrade script for BASE 2.17 --> 3.0 Check login …
- 11:19 AM Ticket #1153 (Handling short read transcript sequence data) updated by
- (In [5832]) References #1153: Handling short read transcript sequence …
- 11:19 AM Changeset [5832] by
- References #1153: Handling short read transcript sequence data Batch …
- 10:45 AM DeveloperInformation edited by
- Typo (diff)
- 9:20 AM MinorReleaseTest edited by
- (diff)
- 9:20 AM MinorReleaseTest edited by
- (diff)
- 9:16 AM Changeset [5831] by
- Removed unused import.
- 9:13 AM Ticket #1153 (Handling short read transcript sequence data) closed by
- fixed
- 9:13 AM Ticket #1590 (Documentation cleanup) closed by
- fixed
- 9:13 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5830]) References #1590: Documentation cleanup Some final …
- 9:13 AM Changeset [5830] by
- References #1590: Documentation cleanup Some final updates to the …
- 8:16 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
- (In [5829]) References #1641: Use bcrypt for storing passwords instead …
- 8:16 AM Changeset [5829] by
- References #1641: Use bcrypt for storing passwords instead of MD5 …
Oct 26, 2011:
- 2:17 PM Ticket #1644 (Make experiments annotable) created by
- For background information see: …
- 2:12 PM Ticket #1643 (Automatic fixes in "Item overview") created by
- The validation that is performed in the "Item overview" can usually …
- 2:06 PM Ticket #1642 (Add support for column mapping that selects a project default item in ...) updated by
-
Description changed
- 2:06 PM Ticket #1642 (Add support for column mapping that selects a project default item in ...) created by
- If a property is not mapped to a column in the batch item importers …
- 1:56 PM Ticket #599 (Write "Appendix: migrate.properties reference") closed by
- wontfix: The migration program was removed a long time ago.
- 1:50 PM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) closed by
- fixed: (In [5828]) Fixes #1641: Use bcrypt for storing passwords instead of …
- 1:50 PM Changeset [5828] by
- Fixes #1641: Use bcrypt for storing passwords instead of MD5 This …
- 12:51 PM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
- (In [5827]) References #1641: Use bcrypt for storing passwords instead …
- 12:51 PM Changeset [5827] by
- References #1641: Use bcrypt for storing passwords instead of MD5 …
- 10:47 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
-
Status, Owner changed
- 10:47 AM Ticket #1590 (Documentation cleanup) updated by
- (In [5826]) References #1590: Documentation cleanup Updated diagram …
- 10:47 AM Changeset [5826] by
- References #1590: Documentation cleanup Updated diagram and text …
- 10:46 AM Ticket #1640 (Use a salt value when storing hashed passwords) updated by
-
Milestone changed
- 10:40 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) updated by
-
Description changed
- 10:39 AM Ticket #1640 (Use a salt value when storing hashed passwords) closed by
- wontfix: Replaced by #1641.
- 10:39 AM Ticket #1641 (Use bcrypt for storing passwords instead of MD5) created by
- This ticket replaces #1640. See …
- 10:27 AM Ticket #1640 (Use a salt value when storing hashed passwords) updated by
- It seems like using a salt is not good enough. Brute-force attacks of …
Oct 25, 2011:
- 8:27 PM Ticket #1640 (Use a salt value when storing hashed passwords) created by
- The current implementation store passwords to BASE as MD5 hash values. …
- 3:21 PM Tickets #522,523 batch updated by
- (In [5825]) Addresses #522 and #523.
- 3:21 PM Changeset [5825] by
- Addresses #522 and #523.
- 2:27 PM Tickets #522,523 batch updated by
- (In [5824]) Addresses #522 and #523.
- 2:27 PM Changeset [5824] by
- Addresses #522 and #523.
- 2:22 PM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
-
Status, Owner, Milestone changed
- 2:22 PM Ticket #522 (Write "Why use BASE" section) updated by
-
Milestone, Owner, Status changed
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