Timeline



Apr 16, 2010:

12:46 PM Ticket #1397 (Function to inherit annotations for all experimental factors in the ...) updated by Nicklas Nordborg
(In [5314]) References #1397: Function to inherit annotations for all …
12:46 PM Changeset [5314] by Nicklas Nordborg
References #1397: Function to inherit annotations for all experimental …
11:02 AM Ticket #1402 (New Affymetrix CEL file support) updated by Nicklas Nordborg
See also this thread on the mailing list: …
8:46 AM Ticket #1466 (Fix schema version conflict) updated by Nicklas Nordborg
Priority changed
8:44 AM Ticket #1387 (More performance enhancements needed for experiment explorer) closed by Nicklas Nordborg
invalid: This ticket just references other tickets and contains no useful …
8:43 AM Ticket #1459 (Named permissions keys that store predefined permissions for ...) updated by Nicklas Nordborg
Milestone changed
8:42 AM Ticket #1431 (Describe extra values. What are they? How are they created?) updated by Nicklas Nordborg
Milestone changed
8:42 AM Ticket #1429 (Document BASEfile exporter plug-in) updated by Nicklas Nordborg
Milestone, Summary changed
8:41 AM Ticket #1428 (Write "Formulas" section) updated by Nicklas Nordborg
Milestone changed
8:40 AM Ticket #1480 (Advanced field converter) updated by Nicklas Nordborg
Milestone changed
8:40 AM Ticket #1479 (Create BASEfile importer for the external program executor) updated by Nicklas Nordborg
Type, Milestone changed
8:40 AM Ticket #1478 (Create BASEfile exporter for the external program executor) updated by Nicklas Nordborg
Milestone changed
8:39 AM Ticket #1472 (Get rid of Javascript elements that use the 'defer' attribute) updated by Nicklas Nordborg
Milestone changed
8:39 AM Ticket #1471 (Implement equals() and hashCode() in all QueryElement implementations) updated by Nicklas Nordborg
Milestone changed
8:38 AM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Nicklas Nordborg
Milestone changed
8:38 AM Ticket #1462 (Select plugin+configuration in a single list) updated by Nicklas Nordborg
Milestone changed
8:36 AM Ticket #1483 (The "Display long text=On click" option doens't work in Internet explorer 8) closed by Nicklas Nordborg
fixed: (In [5313]) Fixes #1483: The "Display long text=On click" option …
8:36 AM Changeset [5313] by Nicklas Nordborg
Fixes #1483: The "Display long text=On click" option doens't work in …
7:10 AM Ticket #1483 (The "Display long text=On click" option doens't work in Internet explorer 8) updated by Nicklas Nordborg
Status, Owner changed
7:10 AM Ticket #1483 (The "Display long text=On click" option doens't work in Internet explorer 8) created by Nicklas Nordborg
The text is cropped withing the visible area and it is not possible to …

Apr 15, 2010:

12:02 PM Ticket #1482 ("Test with file" function display [object] for all mapping expressions ...) closed by Nicklas Nordborg
fixed: (In [5312]) Fixes #1482: "Test with file" function display [object] …
12:02 PM Changeset [5312] by Nicklas Nordborg
Fixes #1482: "Test with file" function display [object] for all …
11:09 AM Ticket #1482 ("Test with file" function display [object] for all mapping expressions ...) updated by Nicklas Nordborg
Status, Owner changed
11:09 AM Ticket #1482 ("Test with file" function display [object] for all mapping expressions ...) created by Nicklas Nordborg
1. Choose any plug-in that supports the "Test with file" function, for …
7:18 AM Ticket #1443 (External Plugin Executor) closed by Nicklas Nordborg
fixed

Apr 14, 2010:

9:14 AM Ticket #1481 (org.hibernate.PropertyAccessException when viewing details of a feature) closed by Nicklas Nordborg
fixed: (In [5311]) Fixes #1481: org.hibernate.PropertyAccessException when …
9:14 AM Changeset [5311] by Nicklas Nordborg
Fixes #1481: org.hibernate.PropertyAccessException when viewing …
8:46 AM Ticket #1481 (org.hibernate.PropertyAccessException when viewing details of a feature) updated by Nicklas Nordborg
Owner, Status changed

Apr 13, 2010:

8:25 PM Changeset [5310] by Nicklas Nordborg
References #1443: External Plugin Executor Added debug-mode parameter …
8:25 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5310]) References #1443: External Plugin Executor Added …
8:22 PM Tickets #1444,​1448,​1451 batch updated by Nicklas Nordborg
(In [5309]) References #1444, #1448, #1451. Added methods for closing …
8:22 PM Changeset [5309] by Nicklas Nordborg
References #1444, #1448, #1451. Added methods for closing BFS parsers …
8:14 PM Ticket #1481 (org.hibernate.PropertyAccessException when viewing details of a feature) updated by Nicklas Nordborg
Description, Component, Milestone changed
I can verify this problem and also an identical issue when trying to …
11:58 AM Ticket #1481 (org.hibernate.PropertyAccessException when viewing details of a feature) created by base
Exception when trying to see feature's details (after clicking link …
9:46 AM Ticket #1469 (Batch importers should allow more parameters to be set using Configurations) closed by Nicklas Nordborg
fixed: (In [5308]) Fixes #1469: Batch importers should allow more parameters …
9:46 AM Changeset [5308] by Nicklas Nordborg
Fixes #1469: Batch importers should allow more parameters to be set …
9:30 AM Ticket #1469 (Batch importers should allow more parameters to be set using Configurations) updated by Nicklas Nordborg
Description changed

Apr 12, 2010:

6:23 PM Ticket #1343 (Redesign Metadata.getPropertyValue()) updated by Nicklas Nordborg
(In [5307]) References #1343: Redesign Metadata.getPropertyValue() …
6:23 PM Changeset [5307] by Nicklas Nordborg
References #1343: Redesign Metadata.getPropertyValue() Removed debug …
3:46 PM Ticket #1469 (Batch importers should allow more parameters to be set using Configurations) updated by Nicklas Nordborg
Status, Owner, Priority changed
3:00 PM Ticket #1480 (Advanced field converter) created by Nicklas Nordborg
The current field converter used by the BFS exporter/external program …
2:47 PM Ticket #1478 (Create BASEfile exporter for the external program executor) updated by Nicklas Nordborg
See also #1479, #1443 and #741.
2:47 PM Ticket #1479 (Create BASEfile importer for the external program executor) created by Nicklas Nordborg
See also #1478, #1443 and #741.
2:45 PM Ticket #1478 (Create BASEfile exporter for the external program executor) created by Nicklas Nordborg
2:43 PM Ticket #1343 (Redesign Metadata.getPropertyValue()) closed by Nicklas Nordborg
fixed: (In [5306]) Fixes #1343: Redesign Metadata.getPropertyValue()
2:43 PM Changeset [5306] by Nicklas Nordborg
Fixes #1343: Redesign Metadata.getPropertyValue()
11:35 AM Ticket #1364 (Update Hibernate when HHH-4065 has been fixed) closed by Nicklas Nordborg
fixed: (In [5305]) Fixes #1364: Update Hibernate when HHH-4065 has been fixed …
11:35 AM Changeset [5305] by Nicklas Nordborg
Fixes #1364: Update Hibernate when HHH-4065 has been fixed 3.5.0 has …
10:00 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5304]) References #1443: External Plugin Executor Include …
10:00 AM Changeset [5304] by Nicklas Nordborg
References #1443: External Plugin Executor Include import/export …
9:39 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
> I cannot explain why the query could not find all plug-ins owned by …
9:19 AM Changeset [5303] by Nicklas Nordborg
References #1443: External Plugin Executor Fixes an issue with spaces …
9:19 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5303]) References #1443: External Plugin Executor Fixes an issue …
8:27 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
> While I am writing this, how do I define defaults for bioassay …
8:20 AM Ticket #1477 (Support terminal-based browsers) closed by Nicklas Nordborg
wontfix

Apr 7, 2010:

4:22 PM Ticket #1443 (External Plugin Executor) updated by Jari Häkkinen
Replying to nicklas: > This more or less completes the …
10:32 AM Ticket #1443 (External Plugin Executor) updated by Jari Häkkinen
Replying to nicklas: > In any case I suspect that …

Apr 1, 2010:

10:55 AM Ticket #1477 (Support terminal-based browsers) updated by base
I agree. We have a similar problem connecting from the Mars Explorer …
9:00 AM Ticket #1477 (Support terminal-based browsers) created by base
Quite often I need to access my BASE instance over a ssh connection …

Mar 31, 2010:

8:04 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5302]) References #1443: External Plugin Executor Field …
8:04 PM Changeset [5302] by Nicklas Nordborg
References #1443: External Plugin Executor Field conversion for assay …
5:19 PM Changeset [5301] by Jari Häkkinen
Added missing svn property.
3:35 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5300]) References #1443: External Plugin Executor Field …
3:35 PM Changeset [5300] by Nicklas Nordborg
References #1443: External Plugin Executor Field conversion now …
1:54 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
It is not possible to go backwards in the plug-in configuration …
1:46 PM Ticket #1343 (Redesign Metadata.getPropertyValue()) updated by Nicklas Nordborg
(In [5299]) References #1343: Redesign Metadata.getPropertyValue() …
1:46 PM Changeset [5299] by Nicklas Nordborg
References #1343: Redesign Metadata.getPropertyValue() Removed all …
1:42 PM Changeset [5298] by Jari Häkkinen
Typos
1:36 PM Ticket #1443 (External Plugin Executor) updated by Jari Häkkinen
I am seeing a strange thing. I am creating a new configuration. If I …
1:26 PM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) updated by Nicklas Nordborg
(In [5297]) References #1474: Exporting raw data with TableExporter is …
1:26 PM Changeset [5297] by Nicklas Nordborg
References #1474: Exporting raw data with TableExporter is slow if …
1:23 PM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) updated by Nicklas Nordborg
(In [5296]) References #1474: Exporting raw data with TableExporter is …
1:23 PM Changeset [5296] by Nicklas Nordborg
References #1474: Exporting raw data with TableExporter is slow if …
12:18 PM Ticket #1476 (Exporting reporters in a reporter list fails if ID or Registered are ...) closed by Nicklas Nordborg
fixed: (In [5295]) Fixes #1476: Exporting reporters in a reporter list fails …
12:18 PM Changeset [5295] by Nicklas Nordborg
Fixes #1476: Exporting reporters in a reporter list fails if ID or …
12:09 PM Ticket #1476 (Exporting reporters in a reporter list fails if ID or Registered are ...) created by Nicklas Nordborg
Stack trace: […] The problem is that the two columns are using an …
11:30 AM Ticket #1475 (Raw data/Reporter export fails if ID is included) updated by Nicklas Nordborg
Summary changed
There is an identical problem with exporting reporters.
11:27 AM Ticket #1475 (Raw data/Reporter export fails if ID is included) closed by Nicklas Nordborg
fixed: Was fixed in [5239].
11:26 AM Ticket #1475 (Raw data/Reporter export fails if ID is included) created by Nicklas Nordborg
Stack trace: […] The cause of this is probably that the query …
11:19 AM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) updated by Nicklas Nordborg
The export time went down to <1 minute after the fix.
11:14 AM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) closed by Nicklas Nordborg
fixed: (In [5294]) Fixes #1474: Exporting raw data with TableExporter is slow …
11:14 AM Changeset [5294] by Nicklas Nordborg
Fixes #1474: Exporting raw data with TableExporter is slow if reporter …
11:13 AM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) updated by Nicklas Nordborg
Owner, Status changed
11:12 AM Ticket #1474 (Exporting raw data with TableExporter is slow if reporter column are ...) created by Nicklas Nordborg
The table exporter is very slow when exporting raw data and the user …

Mar 30, 2010:

3:40 PM Ticket #1343 (Redesign Metadata.getPropertyValue()) updated by Nicklas Nordborg
(In [5293]) References #1343: Redesign Metadata.getPropertyValue() …
3:40 PM Changeset [5293] by Nicklas Nordborg
References #1343: Redesign Metadata.getPropertyValue() The core of …

Mar 29, 2010:

10:23 AM Ticket #1343 (Redesign Metadata.getPropertyValue()) updated by Nicklas Nordborg
Priority, Status, Owner, Milestone changed
I think we need this to avoid the need to hard-code property/field …

Mar 26, 2010:

2:30 PM Changeset [5292] by Nicklas Nordborg
References #1443: External Plugin Executor Replaced the field …
2:30 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5292]) References #1443: External Plugin Executor Replaced the …
12:57 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5291]) References #1443: External Plugin Executor Completed …
12:57 PM Changeset [5291] by Nicklas Nordborg
References #1443: External Plugin Executor Completed implementation …
11:00 AM Changeset [5290] by Nicklas Nordborg
References #1443: External Plugin Executor Implemented toString() in …
11:00 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5290]) References #1443: External Plugin Executor Implemented …
10:54 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5289]) References #1443: External Plugin Executor Check that …
10:54 AM Changeset [5289] by Nicklas Nordborg
References #1443: External Plugin Executor Check that defined fields …
9:08 AM Ticket #1473 (Popup windows open on the incorrect screen in a multi-screen setup) closed by Nicklas Nordborg
fixed: (In [5288]) Fixes #1473: Popup windows open on the incorrect screen in …
9:08 AM Changeset [5288] by Nicklas Nordborg
Fixes #1473: Popup windows open on the incorrect screen in a …
8:47 AM Ticket #1473 (Popup windows open on the incorrect screen in a multi-screen setup) created by Nicklas Nordborg
This is related to the coordinate system which can use negative …

Mar 25, 2010:

3:31 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5287]) References #1443: External Plugin Executor Added error …
3:31 PM Changeset [5287] by Nicklas Nordborg
References #1443: External Plugin Executor Added error checking of …
2:52 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5286]) References #1443: External Plugin Executor Added …
2:52 PM Changeset [5286] by Nicklas Nordborg
References #1443: External Plugin Executor Added …

Mar 24, 2010:

2:47 PM Ticket #1472 (Get rid of Javascript elements that use the 'defer' attribute) updated by Nicklas Nordborg
A quick search found 'defer' in the following places: * Taglibs: …
2:28 PM Ticket #1472 (Get rid of Javascript elements that use the 'defer' attribute) created by Nicklas Nordborg
We should at least investigate the behavior of such scripts and make …
2:26 PM Ticket #1453 (Inherit annotations - parents not displayed without 1st clicking ...) closed by Nicklas Nordborg
duplicate: I have made some tests to find out in which order the switchTab() and …
1:24 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5285]) References #1443: External Plugin Executor Added test …
1:24 PM Changeset [5285] by Nicklas Nordborg
References #1443: External Plugin Executor Added test case for …
1:22 PM Ticket #1451 (Implement BFS importer for spot data) updated by Nicklas Nordborg
(In [5284]) References #1451: Implement BFS importer for spot data …
1:22 PM Changeset [5284] by Nicklas Nordborg
References #1451: Implement BFS importer for spot data Added support …
11:42 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5283]) References #1443: External Plugin Executor Properly …
11:42 AM Changeset [5283] by Nicklas Nordborg
References #1443: External Plugin Executor Properly tokenize command …
8:50 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
The last changeset [5282] also adds proper support for aborting the …
8:47 AM Changeset [5282] by Nicklas Nordborg
References #1443: External Plugin Executor If executed on a job …
8:47 AM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5282]) References #1443: External Plugin Executor If executed on …

Mar 23, 2010:

11:01 PM Ticket #1453 (Inherit annotations - parents not displayed without 1st clicking ...) updated by Nicklas Nordborg
This could be a race condition between two scripts on the page. There …
2:56 PM Changeset [5281] by Nicklas Nordborg
References #1443: External Plugin Executor Internet explorer can now …
2:56 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5281]) References #1443: External Plugin Executor Internet …
2:02 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5280]) References #1443: External Plugin Executor * Added …
2:02 PM Changeset [5280] by Nicklas Nordborg
References #1443: External Plugin Executor * Added support for …
1:04 PM Ticket #1454 (Pooled biomaterials doesn't return all annotatable parents) closed by Nicklas Nordborg
fixed: (In [5279]) Fixes #1454: Pooled biomaterials doesn't return all …
1:04 PM Changeset [5279] by Nicklas Nordborg
Fixes #1454: Pooled biomaterials doesn't return all annotatable …
12:52 PM Changeset [5278] by Nicklas Nordborg
References #1443: External Plugin Executor * Added support for …
12:52 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5278]) References #1443: External Plugin Executor * Added …
12:22 PM Ticket #1454 (Pooled biomaterials doesn't return all annotatable parents) updated by Nicklas Nordborg
The cause of this problem is an incorrect implementation of the …
12:18 PM Ticket #1454 (Pooled biomaterials doesn't return all annotatable parents) updated by Nicklas Nordborg
Component, Priority, Milestone, Summary changed
I think we have found a reasonable explanation for this problem. It …
8:32 AM Ticket #1471 (Implement equals() and hashCode() in all QueryElement implementations) created by Nicklas Nordborg
This is a feature that would be useful since we then don't have to …

Mar 22, 2010:

1:45 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5277]) References #1443: External Plugin Executor * Added …
1:45 PM Changeset [5277] by Nicklas Nordborg
References #1443: External Plugin Executor * Added support for …

Mar 19, 2010:

8:49 PM Ticket #791 (Plug-in execution time estimates) updated by Nicklas Nordborg
This ticket has been around for some time and I really don't think …
3:43 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Nicklas Nordborg
I made a quick check and the only plug-in that doesn't use SHORT or …
3:03 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Jari Häkkinen
Replying to nicklas: > This already exists in the job …
3:01 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Jari Häkkinen
Replying to nicklas: > Just a note... the current …
2:53 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Nicklas Nordborg
Just a note... the current implementation in most plug-ins is not very …
2:45 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) updated by Nicklas Nordborg
This already exists in the job listing. The column is "Execution …
2:36 PM Ticket #1470 (Getting jobagent status information whether a job is a short or long job) created by Jari Häkkinen
It would be nice to see this information in the jobagent listing and …

Mar 18, 2010:

1:53 PM Ticket #1467 (Race condition when displaying file view page causes it to display ...) closed by Nicklas Nordborg
fixed: (In [5276]) Fixes #1467: Race condition when displaying file view page …
1:53 PM Changeset [5276] by Nicklas Nordborg
Fixes #1467: Race condition when displaying file view page causes it …
1:32 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5275]) References #1443: External Plugin Executor * The BFS …
1:32 PM Changeset [5275] by Nicklas Nordborg
References #1443: External Plugin Executor * The BFS export now …

Mar 17, 2010:

7:51 PM Changeset [5274] by Nicklas Nordborg
References #1443: External Plugin Executor Reworked parameter …
7:51 PM Ticket #1443 (External Plugin Executor) updated by Nicklas Nordborg
(In [5274]) References #1443: External Plugin Executor Reworked …
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