Timeline
Oct 27, 2009:
- 2:37 PM Changeset [5164] by
- References #1377: Filter item lists on the 'Shared to' column The …
- 2:37 PM Ticket #1377 (Filter item lists on the 'Shared to' column) updated by
- (In [5164]) References #1377: Filter item lists on the 'Shared to' …
- 10:29 AM Ticket #1420 (Round values imported using Manual transform) updated by
- This seems to be what one can expect. Values are stored in the …
- 10:06 AM Ticket #1420 (Round values imported using Manual transform) created by
- When using Manual transform to import spot data (Ch 1 values) …
Oct 26, 2009:
- 12:34 PM Ticket #1377 (Filter item lists on the 'Shared to' column) updated by
-
Status, Owner changed
- 10:59 AM Changeset [5163] by
- Fixes #1418: List of inherited annotations may include annotations …
- 10:59 AM Ticket #1418 (List of inherited annotations may include annotations that are not ...) closed by
- fixed: (In [5163]) Fixes #1418: List of inherited annotations may include …
- 10:58 AM Ticket #1418 (List of inherited annotations may include annotations that are not ...) updated by
-
Summary changed
- 9:10 AM Ticket #1418 (List of inherited annotations may include annotations that are not ...) updated by
- I agree with your findings, we made some further test using experiment …
- 8:58 AM Ticket #1418 (List of inherited annotations may include annotations that are not ...) updated by
- From what I can see * The information in the database is correct, …
- 8:26 AM Ticket #1418 (List of inherited annotations may include annotations that are not ...) updated by
-
Owner, Status changed
- 8:23 AM Ticket #1419 (Missing query, SET_INTENSITYTRANSFORM_ON_BIOASSAYSETS, in ...) closed by
- fixed: (In [5162]) Fixes #1419: Missing query, …
- 8:23 AM Changeset [5162] by
- Fixes #1419: Missing query, SET_INTENSITYTRANSFORM_ON_BIOASSAYSETS, in …
- 8:16 AM Ticket #1419 (Missing query, SET_INTENSITYTRANSFORM_ON_BIOASSAYSETS, in ...) updated by
-
Owner, Status, Description changed
- 8:14 AM Ticket #1419 (Missing query, SET_INTENSITYTRANSFORM_ON_BIOASSAYSETS, in ...) created by
- This query is needed to update from BASE 2.11 to BASE 2.12 and was …
Oct 23, 2009:
- 7:32 PM Ticket #1418 (List of inherited annotations may include annotations that are not ...) updated by
- I think the problem is with the caching system. The information in the …
- 4:40 PM Ticket #1418 (List of inherited annotations may include annotations that are not ...) created by
- I have two different symptoms on the problem. The problem is found in …
- 1:48 PM Changeset [5161] by
- Fixes #1417: SessionControl.updateLastAccess() should not check if it …
- 1:48 PM Ticket #1417 (SessionControl.updateLastAccess() should not check if it is closed or not) closed by
- fixed: (In [5161]) Fixes #1417: SessionControl.updateLastAccess() should not …
- 1:47 PM Ticket #1417 (SessionControl.updateLastAccess() should not check if it is closed or not) created by
- This can result in some cleanup issues. Eg. calling logout() should …
- 1:44 PM Ticket #1416 (Base1PluginExecuter doesn't set the plug-in configuration description ...) closed by
- fixed: (In [5160]) Fixes #1416: Base1PluginExecuter doesn't set the plug-in …
- 1:44 PM Changeset [5160] by
- Fixes #1416: Base1PluginExecuter doesn't set the plug-in configuration …
- 1:44 PM Ticket #1416 (Base1PluginExecuter doesn't set the plug-in configuration description ...) updated by
-
Owner, Status, Component changed
- 1:25 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) closed by
- fixed: (In [5159]) Fixes #1405: Use 'description' as help text for job …
- 1:25 PM Changeset [5159] by
- Fixes #1405: Use 'description' as help text for job parameters if the …
- 12:58 PM Ticket #1416 (Base1PluginExecuter doesn't set the plug-in configuration description ...) created by
- When a BASE 1 plug-in is configured with the help of a plug-in …
- 12:34 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
-
Summary, Status, Owner changed
- 11:34 AM Ticket #1415 (Lazy directory loading doesn't work with Internet Explorer) updated by
- #1413 includes the same fix for the trunk. There should not be any …
- 11:33 AM Changeset [5158] by
- Fixes #1413: Make the directory icon clickable in the Files and …
- 11:33 AM Ticket #1413 (Make the directory icon clickable in the Files and directories view) closed by
- fixed: (In [5158]) Fixes #1413: Make the directory icon clickable in the …
- 11:28 AM Changeset [5157] by
- Fixes #1415: Lazy directory loading doesn't work with Internet Explorer
- 11:28 AM Ticket #1415 (Lazy directory loading doesn't work with Internet Explorer) closed by
- fixed: (In [5157]) Fixes #1415: Lazy directory loading doesn't work with …
- 10:47 AM Ticket #1415 (Lazy directory loading doesn't work with Internet Explorer) created by
- Using Internet explorer 8. 1. Go to View -> Files. 2. Try expand …
- 8:31 AM Ticket #1413 (Make the directory icon clickable in the Files and directories view) updated by
-
Status, Owner changed
Oct 22, 2009:
- 7:47 PM Ticket #1414 (Search function that searches all directories for a file/directory) updated by
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Description changed
- 5:36 PM Ticket #1414 (Search function that searches all directories for a file/directory) created by
- If you are looking for a file but doesn't know in which directory it …
- 5:22 PM Ticket #1398 (File tree filter) updated by
- Oh... I didn't get that. This is an entirely different topic.
- 3:44 PM Ticket #1398 (File tree filter) updated by
- Replying to nicklas: > The filter already searchs both …
- 3:24 PM Ticket #1398 (File tree filter) closed by
- wontfix: Replaced by #1413 which is probably a better solution.
- 3:22 PM Ticket #1413 (Make the directory icon clickable in the Files and directories view) created by
- When the icon is clicked, the same thing should happen as if the user …
- 3:20 PM Ticket #1398 (File tree filter) updated by
- The filter already searchs both files and directories for columns that …
- 3:15 PM Ticket #1398 (File tree filter) updated by
- Replying to nicklas: > Wouldn't this just move the problem …
- 2:22 PM Ticket #1398 (File tree filter) updated by
- Wouldn't this just move the problem to finding the correct project and …
- 2:15 PM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) updated by
-
Milestone changed
- 2:15 PM Ticket #1402 (New Affymetrix CEL file support) updated by
-
Milestone changed
If we decide to upgrade to a newer Fusion SDK I think we should skip … - 2:06 PM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
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Component changed
- 2:06 PM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
-
Summary, Milestone changed
Yes... only the directory would be visible which would make the … - 2:01 PM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) updated by
-
Summary, Milestone changed
Before starting the BASE 1 plug-in the 'stdin.txt' file is created … - 1:47 PM Ticket #1377 (Filter item lists on the 'Shared to' column) updated by
-
Component, Summary, Milestone changed
- 1:45 PM Ticket #1397 (Function to inherit annotations for all experimental factors in the ...) updated by
-
Milestone changed
- 1:45 PM Ticket #1349 (Select button does not work in IE7.0 + XP Home SP3) closed by
- worksforme
- 1:43 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
-
Milestone changed
- 9:10 AM Milestone BASE 2.14 completed
- The main feature of this release: * Major performance enhancements …
- 9:09 AM Changeset [5156] by
- Merged pre-2.14-releases to the trunk
- 8:52 AM DownloadPage edited by
- Releasing 2.14 (diff)
- 8:40 AM Changeset [5155] by
- Changes for future release 2.14.1
- 8:29 AM Changeset [5154] by
- Tagging version 2.14
- 8:28 AM Changeset [5153] by
- Preparing release 2.14
Oct 21, 2009:
- 2:39 PM Ticket #1412 (The selected unit for an annotation type should not be remembered when ...) closed by
- fixed: (In [5152]) Fixes #1412: The selected unit for an annotation type …
- 2:39 PM Changeset [5152] by
- Fixes #1412: The selected unit for an annotation type should not be …
- 9:46 AM Ticket #1412 (The selected unit for an annotation type should not be remembered when ...) created by
- To reproduce: 1. Create a numerical annotation type. Select any …
- 8:40 AM Ticket #1409 (Annotation summary table displays NaNs) updated by
-
Milestone changed
Oct 20, 2009:
- 2:51 PM Changeset [5151] by
- Changes for future release 2.15
- 2:50 PM Changeset [5150] by
- Forking new minor version 2.14 branch
- 2:49 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) closed by
- fixed: (In [5149]) Fixes #1386: Plot function in the bioassay table in …
- 2:49 PM Changeset [5149] by
- Fixes #1386: Plot function in the bioassay table in experiment …
- 2:35 PM Changeset [5148] by
- Fixes #1410 Sort problem in EExplorer when Avg
- 2:35 PM Ticket #1410 (Sort problem in EExplorer when Avg) closed by
- fixed: (In [5148]) Fixes #1410 Sort problem in EExplorer when Avg
- 12:33 PM Changeset [5147] by
- Fixes #1389: Cache annotation summary groups in experiment explorer …
- 12:33 PM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by
- fixed: (In [5147]) Fixes #1389: Cache annotation summary groups in experiment …
- 10:26 AM Changeset [5146] by
- Fixes #1411: Test programs must empty the static cache before running
- 10:26 AM Ticket #1411 (Test programs must empty the static cache before running) closed by
- fixed: (In [5146]) Fixes #1411: Test programs must empty the static cache …
- 8:51 AM Ticket #1411 (Test programs must empty the static cache before running) updated by
-
Status, Owner changed
- 8:50 AM Changeset [5145] by
- Fixes #1404: Use cached annotations in "item overview" The tests in …
- 8:50 AM Ticket #1404 (Use cached annotations in "item overview") closed by
- fixed: (In [5145]) Fixes #1404: Use cached annotations in "item overview" …
- 8:34 AM Ticket #1410 (Sort problem in EExplorer when Avg) updated by
-
Owner, Status changed
- 8:21 AM Changeset [5144] by
- Fixes #1406: Add a protocol parameter in the 'roles' test case Added …
- 8:21 AM Ticket #1406 (Add a protocol parameter in the 'roles' test case) closed by
- fixed: (In [5144]) Fixes #1406: Add a protocol parameter in the 'roles' test …
- 7:51 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) reopened by
- See comment 19+ in ticket 1374
- 7:47 AM Ticket #1374 (Caching of experimental factors) updated by
- This is a side-effect of #1389 that introduced in-memory caching of …
- 7:35 AM Ticket #1410 (Sort problem in EExplorer when Avg) updated by
- I can confirm this. There is …
Oct 19, 2009:
- 4:15 PM Ticket #1410 (Sort problem in EExplorer when Avg) updated by
- Replying to nicklas: > Can you replace the image with a …
- 3:32 PM Ticket #1411 (Test programs must empty the static cache before running) created by
- If old data from previous executions is still in the cache, the test …
- 3:27 PM Ticket #1410 (Sort problem in EExplorer when Avg) updated by
- Can you replace the image with a non-resized version? The current …
- 2:54 PM Ticket #1410 (Sort problem in EExplorer when Avg) created by
- Noticed that sorting of the bioassay table in EExplorer doesn't work …
- 2:35 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: > Everything seems to be working, …
- 2:25 PM Ticket #1374 (Caching of experimental factors) updated by
- We have encountered problems on my test setup. When we add an …
- 1:32 PM Changeset [5143] by
- References #1404: Use cached annotations in "item overview" Fixes a …
- 1:32 PM Ticket #1404 (Use cached annotations in "item overview") updated by
- (In [5143]) References #1404: Use cached annotations in "item …
- 11:36 AM Ticket #1406 (Add a protocol parameter in the 'roles' test case) updated by
-
Owner, Status changed
- 11:36 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Everything seems to be working, except that the option with a bar plot …
- 11:34 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) closed by
- fixed: Everything seems to be ok now.
- 9:42 AM Ticket #1409 (Annotation summary table displays NaNs) closed by
- worksforme: Works for me now as of trunk revision 5142
- 9:37 AM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) updated by
- Now it works for me too. What a difference on revision in the trunk makes.
- 9:11 AM Changeset [5142] by
- References #1385 and #1386. Plot functions in experiment explorer The …
- 9:11 AM Tickets #1385,1386 batch updated by
- (In [5142]) References #1385 and #1386. Plot functions in experiment …
- 9:03 AM Changeset [5141] by
- References #1386: Plot function in the bioassay table in experiment …
- 9:03 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- (In [5141]) References #1386: Plot function in the bioassay table in …
- 8:25 AM Changeset [5140] by
- References #1384: Move the annotation summary information table in …
- 8:25 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- (In [5140]) References #1384: Move the annotation summary information …
- 8:22 AM Changeset [5139] by
- References #1388: Display the count for each group in the annotation …
- 8:22 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) updated by
- (In [5139]) References #1388: Display the count for each group in the …
- 8:11 AM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) updated by
- This may actually work now that the problem with non-unique labels …
- 8:08 AM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) updated by
- Please update to the latest trunk version. If you still have problems …
Oct 17, 2009:
- 12:25 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) updated by
- Replying to nicklas: > It is not possible. The only way to …
- 9:34 AM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) updated by
- Replying to nicklas: > I can. And, that is it?
Oct 16, 2009:
- 5:06 PM Ticket #1409 (Annotation summary table displays NaNs) updated by
- The values are populated by Javascript. Can you check if you get any …
- 4:57 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) updated by
-
Milestone changed
- 4:57 PM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) closed by
- worksforme: I can.
- 4:54 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) closed by
- wontfix: It is not possible. The only way to know the coordinates were to put …
- 3:58 PM Ticket #1409 (Annotation summary table displays NaNs) created by
- The screen dump shows the problem.
- 3:47 PM Ticket #1408 (Cannot deselect annotation in the annoation summary drop down) created by
- Related to ticket:1383 After selecting one annotation (out of one …
- 3:43 PM Ticket #1407 (Functionality of the "No labels" selection in plot function in the ...) created by
- Related to ticket:1386 Checking the No labels box removes all labels …
- 2:39 PM Ticket #1406 (Add a protocol parameter in the 'roles' test case) created by
- To get some more automatic testing for the 'item overview' …
- 2:27 PM Changeset [5138] by
- References #1385 and #1386. Plot functions in experiment explorer …
- 2:27 PM Tickets #1385,1386 batch updated by
- (In [5138]) References #1385 and #1386. Plot functions in experiment …
- 8:37 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- The index determination should use (vector.length+1) and you will the …
Oct 15, 2009:
- 5:14 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- I found this: …
- 5:08 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
-
Hmmm... so if we use
factor * vector_sizewe get the index for that … - 4:04 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- Replying to nicklas: > > Ties should be solved by taking …
- 3:30 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- > Ties should be solved by taking the arithmetic average of the two …
- 3:04 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- We would prefer that the TU and TL are calculated differently. The …
- 1:00 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
-
I have investigated what kind of help we can get from the
JFreeChart… - 9:42 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) updated by
- (In [5137]) References #1383: Make it possible to select more than one …
- 9:42 AM Changeset [5137] by
- References #1383: Make it possible to select more than one annotation …
- 8:33 AM Changeset [5136] by
- Merged patch release 2.13.1 to the trunk.
- 8:18 AM Milestone BASE 2.13.1 completed
- Bug fixes for 2.13. Revision Log: log:branches/2.13-stable@5089:5134
- 8:17 AM DownloadPage edited by
- Releasing BASE 2.13.1 (diff)
- 8:13 AM Changeset [5135] by
- Changes for future release 2.13.2
- 8:02 AM Changeset [5134] by
- Tagging version 2.13.1
- 8:01 AM Changeset [5133] by
- Preparing release 2.13.1 and fixed some incorrect javadoc links.
Oct 14, 2009:
- 2:16 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
- Replying to nicklas: Sounds like a good strategy
- 2:16 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
-
Milestone, Status, Owner, Description changed
- 1:55 PM Changeset [5132] by
- References #1404: Use cached annotations in "item overview" This …
- 1:55 PM Ticket #1404 (Use cached annotations in "item overview") updated by
- (In [5132]) References #1404: Use cached annotations in "item …
- 11:17 AM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
- Ahh... yes it is a BASE 2 plug-in... But, then I think it is the …
- 10:47 AM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
- Replying to nicklas: You are right. The text I'm …
- 9:44 AM Changeset [5131] by
- References #1374 and #1403: Caching of annotations, etc... Made some …
- 9:44 AM Tickets #1374,1403 batch updated by
- (In [5131]) References #1374 and #1403: Caching of annotations, etc... …
Oct 13, 2009:
- 7:22 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
- The text you are referring to was not intended to be used as help …
- 2:20 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) updated by
- The possibility to get a help-text pop-up from the 'configure job' …
- 2:17 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) created by
- The 'Run analysis plugin' pop-up dialogue can contain a useful plugin …
- 12:45 PM Ticket #1404 (Use cached annotations in "item overview") updated by
-
Owner, Status changed
- 12:44 PM Changeset [5130] by
- Fixes #1403: Use cached annotations in experiment explorer, plot …
- 12:44 PM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) closed by
- fixed: (In [5130]) Fixes #1403: Use cached annotations in experiment …
- 11:11 AM WikiStart edited by
- Updated how to cite information. (diff)
- 11:00 AM Ticket #1387 (More performance enhancements needed for experiment explorer) updated by
-
Description changed
- 10:49 AM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) updated by
-
Summary, Owner, Status changed
The experiment explorer shares the experimental factor loading code … - 8:49 AM Ticket #1400 (Store the item id together with annotation sets) closed by
- fixed: (In [5129]) Fixes #1400: Store the item id together with annotation …
- 8:49 AM Changeset [5129] by
- Fixes #1400: Store the item id together with annotation sets More …
- 8:29 AM Changeset [5128] by
- Fixes #1374: Caching of experimental factors Removed timing code.
- 8:29 AM Ticket #1374 (Caching of experimental factors) closed by
- fixed: (In [5128]) Fixes #1374: Caching of experimental factors Removed …
- 8:26 AM Ticket #1404 (Use cached annotations in "item overview") created by
- Caching was fixed in #1374. It seems to be a major performance enhancement.
- 8:25 AM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) created by
- Caching was fixed in #1374. It seems to be a major performance enhancement.
Oct 12, 2009:
- 4:36 PM Ticket #1374 (Caching of experimental factors) updated by
- Replying to nicklas: > Initial caching times: A = 1m9s; B …
- 3:31 PM Ticket #1374 (Caching of experimental factors) updated by
- Initial caching times: A = 1m9s; B = 8.9s Using the cached data: A = …
- 2:41 PM Ticket #1400 (Store the item id together with annotation sets) updated by
- (In [5127]) References #1400: Store the item id together with …
- 2:41 PM Changeset [5127] by
- References #1400: Store the item id together with annotation sets The …
- 2:21 PM Ticket #1374 (Caching of experimental factors) updated by
- We have started with performance tests of this change. Here are some …
- 1:03 PM Ticket #1402 (New Affymetrix CEL file support) updated by
-
Type, Component, Priority changed
- 1:00 PM Ticket #1402 (New Affymetrix CEL file support) created by
- New is a "generic" CEL data file format, for which BASE Affy import …
Oct 9, 2009:
- 2:36 PM Changeset [5126] by
- Fixes #1392: Incorrect warning about non-default platform/variant from …
- 2:36 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) closed by
- fixed: (In [5126]) Fixes #1392: Incorrect warning about non-default …
- 2:28 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) updated by
-
Status, Owner changed
- 2:28 PM Changeset [5125] by
- Fixes #1399: Array slide's create multiple puts a wrong number into …
- 2:28 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) closed by
- fixed: (In [5125]) Fixes #1399: Array slide's create multiple puts a wrong …
- 2:26 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) updated by
-
Owner, Status changed
- 1:20 PM Changeset [5124] by
- References #1374: Caching of experimental factors Implements our own …
- 1:20 PM Ticket #1374 (Caching of experimental factors) updated by
- (In [5124]) References #1374: Caching of experimental factors …
- 12:40 PM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
-
Description changed
- 12:37 PM Changeset [5123] by
- References #1374: Caching of experimental factors The 'Annotations & …
- 12:37 PM Ticket #1374 (Caching of experimental factors) updated by
- (In [5123]) References #1374: Caching of experimental factors The …
- 10:55 AM Changeset [5122] by
- References #1400: Store the item id together with annotation sets …
- 10:55 AM Ticket #1400 (Store the item id together with annotation sets) updated by
- (In [5122]) References #1400: Store the item id together with …
- 10:54 AM Ticket #1374 (Caching of experimental factors) updated by
- (In [5121]) References #1374: Caching of experimental factors This …
- 10:54 AM Changeset [5121] by
- References #1374: Caching of experimental factors This should …
Oct 8, 2009:
- 2:30 PM Changeset [5120] by
- References #1374: Caching of experimental factors The cache is now …
- 2:30 PM Ticket #1374 (Caching of experimental factors) updated by
- (In [5120]) References #1374: Caching of experimental factors The …
- 10:46 AM Changeset [5119] by
- Fixes #1401: One-to-one associations should not be synchronized in the …
- 10:46 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) closed by
- fixed: (In [5119]) Fixes #1401: One-to-one associations should not be …
- 10:46 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) updated by
-
Summary, Description changed
- 9:48 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) updated by
- There is an exect copy of the same problem in …
- 9:44 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) updated by
-
Owner, Status changed
- 9:44 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) created by
- See …
- 9:12 AM Changeset [5118] by
- References #1400: Store the item id together with annotation sets
- 9:12 AM Ticket #1400 (Store the item id together with annotation sets) updated by
- (In [5118]) References #1400: Store the item id together with …
- 7:57 AM Ticket #1400 (Store the item id together with annotation sets) updated by
-
Status, Owner changed
- 7:57 AM Ticket #1400 (Store the item id together with annotation sets) created by
- This would make it easier to load the item that is related to an …
Oct 7, 2009:
- 8:51 AM Ticket #1374 (Caching of experimental factors) updated by
- Arrrggghhh... there are some annoying problems... The auto-detection …
Oct 6, 2009:
- 7:12 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) updated by
-
Milestone changed
You are right. The array batch id should not be used as the batch … - 3:15 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) updated by
- Problematic assignments are in file …
- 3:01 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) created by
- I noticed that when one uses Create multiple wizard on Array Slide …
- 2:09 PM Ticket #1398 (File tree filter) created by
- It would be great to have a little project-filter in the directory …
- 12:56 PM Ticket #1374 (Caching of experimental factors) updated by
- The reporter search was already optimised in #903. The remaining issue …
- 12:40 PM Ticket #1374 (Caching of experimental factors) updated by
- Replying to nicklas: > Changes to the 'inherit …
- 12:38 PM Ticket #1397 (Function to inherit annotations for all experimental factors in the ...) created by
- This ticket elaborate on some points raised in ticket:1374 …
- 12:18 PM Ticket #1374 (Caching of experimental factors) updated by
- Replying to nicklas: > Initial test results indicate that …
- 12:07 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) updated by
- Yes that should be possible. It can sort of be done with the current …
- 11:25 AM Ticket #1396 (Using item properties as experimental factors - how could this be ...) updated by
- Just playing with thoughts of how the described user functionality …
- 11:06 AM Ticket #1374 (Caching of experimental factors) updated by
- Changes to the 'inherit annotations' functionality should go into a …
Oct 5, 2009:
- 10:14 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) updated by
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Milestone changed
This will not be possible in the current version. Might be considered … - 6:17 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) updated by
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Description changed
- 6:13 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) created by
- Would it be possible to somehow make item properties (or some selected …
- 5:32 PM Ticket #1374 (Caching of experimental factors) updated by
- Replying to nicklas: > > Would it be possible to have a …
- 4:40 PM Ticket #1374 (Caching of experimental factors) updated by
- > Would it be possible to present the cache date... The date will be …
- 3:45 PM Ticket #1374 (Caching of experimental factors) updated by
- Would it be possible to present the cache date to the user in the web …
- 11:41 AM Ticket #1374 (Caching of experimental factors) updated by
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Priority, Status, Owner changed
Here is the idea: The offending method is probably the … - 9:27 AM Changeset [5117] by
- Fixes #1394: Inherit annotations (Experimental factors) not available …
- 9:27 AM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) closed by
- fixed: (In [5117]) Fixes #1394: Inherit annotations (Experimental factors) …
- 9:22 AM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
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Milestone, Priority, Status, Type, Owner changed
- 9:20 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
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Priority, Milestone changed
- 9:19 AM Changeset [5116] by
- Fixes #1347: Enable Appearance feature 'Display long text' in …
- 9:19 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
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Resolution changed
(In [5116]) Fixes #1347: Enable Appearance feature 'Display long text' … - 8:54 AM Ticket #1395 (Exerimental factors table width should not be determined by ...) updated by
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Milestone, Priority changed
- 8:54 AM Ticket #1395 (Exerimental factors table width should not be determined by ...) closed by
- fixed: (In [5115]) Fixes #1395: Exerimental factors table width should not be …
- 8:54 AM Changeset [5115] by
- Fixes #1395: Exerimental factors table width should not be determined …
Oct 2, 2009:
- 6:25 PM Ticket #1395 (Exerimental factors table width should not be determined by ...) updated by
- The width of tables are always 100% wide so if there is something that …
- 6:19 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
- Hmmm... I don't know. The table is generated with empty cells on the …
- 4:56 PM Ticket #1395 (Exerimental factors table width should not be determined by ...) created by
- Use case: An Experiment with 70 Experimental factors will have a …
- 4:42 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
- Replying to nicklas: > No, the description in the posted …
- 2:29 PM Changeset [5114] by
- References #1386: Plot function in the bioassay table in experiment …
- 2:29 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- (In [5114]) References #1386: Plot function in the bioassay table in …
- 11:59 AM Ticket #1023 (Add support for using regular expressions when filtering lists) updated by
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Milestone changed
- 11:59 AM Ticket #456 (Mass edit) updated by
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Milestone changed
- 11:59 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by
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Milestone changed
- 11:58 AM Ticket #966 (Registered and possibly last updated – add to all/most items) updated by
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Milestone changed
- 11:57 AM Ticket #727 (Add presentations and publications to the wiki) updated by
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Milestone changed
- 8:36 AM Changeset [5113] by
- Refs #1393. Bumped tomcat version requirement.
- 8:36 AM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- (In [5113]) Refs #1393. Bumped tomcat version requirement.
- 8:23 AM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) closed by
- fixed: (In [5112]) Fixes #1393: The "Edit file" function should check the …
- 8:23 AM Changeset [5112] by
- Fixes #1393: The "Edit file" function should check the size after …
- 7:45 AM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- I can reproduce this on my development machine now. But only after …
Oct 1, 2009:
- 9:38 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- It's better to use the 'string' annotation type if there is only 10 …
- 7:13 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- Replying to nicklas: > Hmmm.... the function to …
- 4:40 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- Hmmm.... the function to automatically inherit annotation builds on …
- 3:56 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) created by
- The functionality that allow rawbioassays to inherit experimental …
- 3:27 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- It is something on the server side. I made a test on the production …
- 2:31 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
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Description changed
- 2:29 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- Tested with an UTF-8 encoded file and there is no problem with it …
- 2:15 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- Hmmm... I just realized that checking the number of bytes …
- 1:35 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: Perhaps then provide the option to …
- 1:19 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) created by
- The "Edit file" function is useful for editing text files below 100kb …
- 1:14 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) created by
- Setup a project and an array design as follows: * Create a new …
- 12:05 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Regarding the plot. It is still only a quick-and-dirty with lots of …
- 11:50 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: > 2. Create one series for each …
- 11:40 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: > There are two options: > I'm in …
- 11:01 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Hmmm... I just also realized that we do not force bioassay names to …
- 10:57 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Good news! JFreeChart can provide pixel coordinate information and it …
Sep 30, 2009:
- 1:23 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
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Milestone, Status, Owner changed
The plot itself should not be too difficult to create. The colored … - 12:56 PM Changeset [5111] by
- Fixes #1380 and #1381: Customize visible reporter fields in experiment …
- 12:56 PM Tickets #1380,1381 batch updated by
- fixed: (In [5111]) Fixes #1380 and #1381: Customize visible reporter fields …
- 12:39 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) closed by
- worksforme: No, the description in the posted image is not expected to be hidden. …
- 11:55 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) reopened by
- 11:54 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
- Replying to nicklas: > This already works for me in …
- 11:33 AM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) updated by
- Replying to nicklas: > If we are going to do this it …
Sep 29, 2009:
- 12:33 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > I don't think it matters …
- 12:28 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Beautiful!
- 12:25 PM Changeset [5110] by
- Added entry to the FAQ.
- 12:12 PM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) updated by
- Hm, I suppose this should enter the FAQ section.
- 11:31 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) closed by
- wontfix: This is a standardized message appearing at all places were no plug-in …
- 11:21 AM Changeset [5109] by
- Fixes #1390: Annotation groups should be sorted according to title
- 11:21 AM Ticket #1390 (Annotation groups should be sorted according to title) closed by
- fixed: (In [5109]) Fixes #1390: Annotation groups should be sorted according …
- 11:10 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) created by
- The message says […] The issue is really that BASE cannot find any …
- 11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) updated by
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Status, Owner changed
- 11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) created by
- The annotation groups are sorted in a semi-random order. The order …
- 11:04 AM Changeset [5108] by
- Fixes #1389: Cache annotation summary groups in experiment explorer
- 11:04 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by
- fixed: (In [5108]) Fixes #1389: Cache annotation summary groups in experiment …
- 10:43 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- I don't think it matters implementation-wise. The current column …
- 10:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Replying to nicklas: The text itself should of course not …
- 10:12 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > > To have it synchronized makes a …
- 9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) updated by
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Owner, Status changed
- 9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) created by
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This may be related to #1387.
Currently, new
AnnotationSummary… - 9:49 AM Changeset [5107] by
- Fixes #1388: Display the count for each group in the annotation …
- 9:49 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) closed by
- fixed: (In [5107]) Fixes #1388: Display the count for each group in the …
- 9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) updated by
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Status, Owner changed
- 9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) created by
- 9:40 AM Tickets #1382,1384 batch updated by
- fixed: (In [5106]) Fixes #1382 and #1384: Move annotation summary selection …
- 9:40 AM Changeset [5106] by
- Fixes #1382 and #1384: Move annotation summary selection and tables
- 8:41 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) updated by
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Status, Owner changed
- 8:41 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
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Status, Owner changed
Sep 28, 2009:
- 7:11 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- I don't think it is possible to have vertically oriented text in the …
- 7:08 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- > To have it synchronized makes a lot of sense since there would be no …
- 6:23 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Replying to nicklas: > I am not sure I like this idea... …
- 5:26 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > Should this be synchronized with …
- 4:09 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- Example in pdf file
- 3:16 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Added a pdf with some descriptions and manually created example plots.
- 2:53 PM Changeset [5105] by
- Fixes #1383: Make it possible to select more than one annotation in …
- 2:53 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) closed by
- fixed: (In [5105]) Fixes #1383: Make it possible to select more than one …
- 12:33 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) updated by
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Owner, Status changed
- 12:33 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Should this be synchronized with the columns in the "Reporter search" …
- 11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) closed by
- fixed: (In [5104]) Fixes #1372: Item link in the 'Overview' tab should use …
- 11:39 AM Changeset [5104] by
- Fixes #1372: Item link in the 'Overview' tab should use the regular …
- 11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) updated by
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Summary, Owner, Status changed
- 10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) closed by
- fixed: (In [5103]) Fixes #1379: Change default minimum intensity value and …
- 10:45 AM Changeset [5103] by
- Fixes #1379: Change default minimum intensity value and add support …
- 10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) updated by
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Summary changed
- 10:14 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) updated by
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Owner, Status changed
- 9:04 AM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) updated by
- If we are going to do this it should be a generic 'list-of-items' …
- 9:02 AM Ticket #1368 (Reload permissions when the refresh button is clicked) closed by
- wontfix: This is the use case that lead to the 'Reload permissions' function …
- 8:59 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
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Milestone changed
I am not sure I like this idea... The table with spot data can grow a … - 8:56 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
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Milestone changed
- 8:55 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) updated by
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Milestone changed
- 8:54 AM Ticket #1381 (Trunkate long strings in experiment explorer) updated by
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Milestone changed
- 8:53 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) updated by
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Milestone changed
This should be rather simple to fix. … - 8:45 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
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Summary changed
- 8:44 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- I don't understand what kind of plot you would like. Please specify …
- 8:43 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- I am not sure that I understand what it is you would like to plot. Is …
- 8:39 AM Ticket #1387 (More performance enhancements needed for experiment explorer) updated by
- Ticket #903 made lots of improvements to the experiment explorer. …
- 8:38 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
- Replying to nicklas: > This is not really related to …
- 8:33 AM Ticket #1375 (Improve experiment explorer display) closed by
- duplicate: This ticket has been split into several new tickets as outlined in the …
- 8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) updated by
-
Description changed
- 8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) created by
- Experiment explorer is still slow (cf ticket:903) and more performance …
- 8:30 AM Ticket #1375 (Improve experiment explorer display) updated by
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Description changed
- 8:30 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) created by
- A plot button in bioassay list header. 1. The plot should display …
- 8:29 AM Ticket #1375 (Improve experiment explorer display) updated by
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Description changed
- 8:28 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) created by
- A plot button in annotation summary table. The plot should be a box …
- 8:26 AM Ticket #1375 (Improve experiment explorer display) updated by
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Description changed
- 8:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) created by
- The annotation summary table should be created to the right of the …
- 8:25 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) created by
- The annotation summary dropdown should be a selection where the user …
- 8:24 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) created by
- Annotation summary dropdown menu should be moved between reporter …
- 8:22 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:21 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:21 AM Ticket #1381 (Trunkate long strings in experiment explorer) created by
- The displayed reporter annotation fields should be truncated as …
- 8:20 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
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Description changed
- 8:19 AM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) updated by
- Replying to nicklas: > I don't understand the request... …
- 8:19 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) created by
- The reporter annotation information display (Reporter View tab) should …
- 8:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
- This is not really related to #1279. The directory in question is not …
- 8:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) closed by
- fixed: (In [5102]) Fixes #1373: Permission denied exception when viewing item …
- 8:09 AM Changeset [5102] by
- Fixes #1373: Permission denied exception when viewing item that has …
- 7:53 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
-
Summary changed
- 7:51 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
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Status, Owner changed
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