Timeline



Oct 14, 2009:

1:55 PM Changeset [5132] by Nicklas Nordborg
References #1404: Use cached annotations in "item overview" This …
9:44 AM Changeset [5131] by Nicklas Nordborg
References #1374 and #1403: Caching of annotations, etc... Made some …

Oct 13, 2009:

2:17 PM Ticket #1405 (Use 'description' as help text for job parameters if the plug-in ...) created by Johan Vallon-Christersson
The 'Run analysis plugin' pop-up dialogue can contain a useful plugin …
12:44 PM Changeset [5130] by Nicklas Nordborg
Fixes #1403: Use cached annotations in experiment explorer, plot …
12:44 PM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) closed by Nicklas Nordborg
fixed: (In [5130]) Fixes #1403: Use cached annotations in experiment …
11:11 AM WikiStart edited by jari
Updated how to cite information. (diff)
8:49 AM Ticket #1400 (Store the item id together with annotation sets) closed by Nicklas Nordborg
fixed: (In [5129]) Fixes #1400: Store the item id together with annotation …
8:49 AM Changeset [5129] by Nicklas Nordborg
Fixes #1400: Store the item id together with annotation sets More …
8:29 AM Changeset [5128] by Nicklas Nordborg
Fixes #1374: Caching of experimental factors Removed timing code.
8:29 AM Ticket #1374 (Caching of experimental factors) closed by Nicklas Nordborg
fixed: (In [5128]) Fixes #1374: Caching of experimental factors Removed …
8:26 AM Ticket #1404 (Use cached annotations in "item overview") created by Nicklas Nordborg
Caching was fixed in #1374. It seems to be a major performance enhancement.
8:25 AM Ticket #1403 (Use cached annotations in experiment explorer, plot function, BASEfile ...) created by Nicklas Nordborg
Caching was fixed in #1374. It seems to be a major performance enhancement.

Oct 12, 2009:

2:41 PM Changeset [5127] by Nicklas Nordborg
References #1400: Store the item id together with annotation sets The …
1:00 PM Ticket #1402 (New Affymetrix CEL file support) created by base
New is a "generic" CEL data file format, for which BASE Affy import …

Oct 9, 2009:

2:36 PM Changeset [5126] by Nicklas Nordborg
Fixes #1392: Incorrect warning about non-default platform/variant from …
2:36 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) closed by Nicklas Nordborg
fixed: (In [5126]) Fixes #1392: Incorrect warning about non-default …
2:28 PM Changeset [5125] by Nicklas Nordborg
Fixes #1399: Array slide's create multiple puts a wrong number into …
2:28 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) closed by Nicklas Nordborg
fixed: (In [5125]) Fixes #1399: Array slide's create multiple puts a wrong …
1:20 PM Changeset [5124] by Nicklas Nordborg
References #1374: Caching of experimental factors Implements our own …
12:37 PM Changeset [5123] by Nicklas Nordborg
References #1374: Caching of experimental factors The 'Annotations & …
10:55 AM Changeset [5122] by Nicklas Nordborg
References #1400: Store the item id together with annotation sets …
10:54 AM Changeset [5121] by Nicklas Nordborg
References #1374: Caching of experimental factors This should …

Oct 8, 2009:

2:30 PM Changeset [5120] by Nicklas Nordborg
References #1374: Caching of experimental factors The cache is now …
10:46 AM Changeset [5119] by Nicklas Nordborg
Fixes #1401: One-to-one associations should not be synchronized in the …
10:46 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) closed by Nicklas Nordborg
fixed: (In [5119]) Fixes #1401: One-to-one associations should not be …
9:44 AM Ticket #1401 (One-to-one associations should not be synchronized in the data layer ...) created by Nicklas Nordborg
See …
9:12 AM Changeset [5118] by Nicklas Nordborg
References #1400: Store the item id together with annotation sets
7:57 AM Ticket #1400 (Store the item id together with annotation sets) created by Nicklas Nordborg
This would make it easier to load the item that is related to an …

Oct 6, 2009:

3:01 PM Ticket #1399 (Array slide's create multiple puts a wrong number into batch index field) created by base
I noticed that when one uses Create multiple wizard on Array Slide …
2:09 PM Ticket #1398 (File tree filter) created by base
It would be great to have a little project-filter in the directory …
12:38 PM Ticket #1397 (Function to inherit annotations for all experimental factors in the ...) created by Johan Vallon-Christersson
This ticket elaborate on some points raised in ticket:1374

Oct 5, 2009:

6:13 PM Ticket #1396 (Using item properties as experimental factors - how could this be ...) created by Johan Vallon-Christersson
Would it be possible to somehow make item properties (or some selected …
9:27 AM Changeset [5117] by Nicklas Nordborg
Fixes #1394: Inherit annotations (Experimental factors) not available …
9:27 AM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) closed by Nicklas Nordborg
fixed: (In [5117]) Fixes #1394: Inherit annotations (Experimental factors) …
9:19 AM Changeset [5116] by Nicklas Nordborg
Fixes #1347: Enable Appearance feature 'Display long text' in …
8:54 AM Ticket #1395 (Exerimental factors table width should not be determined by ...) closed by Nicklas Nordborg
fixed: (In [5115]) Fixes #1395: Exerimental factors table width should not be …
8:54 AM Changeset [5115] by Nicklas Nordborg
Fixes #1395: Exerimental factors table width should not be determined …

Oct 2, 2009:

4:56 PM Ticket #1395 (Exerimental factors table width should not be determined by ...) created by Johan Vallon-Christersson
Use case: An Experiment with 70 Experimental factors will have a …
2:29 PM Changeset [5114] by Nicklas Nordborg
References #1386: Plot function in the bioassay table in experiment …
8:36 AM Changeset [5113] by jari
Refs #1393. Bumped tomcat version requirement.
8:23 AM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) closed by Nicklas Nordborg
fixed: (In [5112]) Fixes #1393: The "Edit file" function should check the …
8:23 AM Changeset [5112] by Nicklas Nordborg
Fixes #1393: The "Edit file" function should check the size after …

Oct 1, 2009:

3:56 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) created by Johan Vallon-Christersson
The functionality that allow rawbioassays to inherit experimental …
1:19 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) created by Nicklas Nordborg
The "Edit file" function is useful for editing text files below 100kb …
1:14 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) created by Nicklas Nordborg
Setup a project and an array design as follows: * Create a new …

Sep 30, 2009:

12:56 PM Changeset [5111] by Nicklas Nordborg
Fixes #1380 and #1381: Customize visible reporter fields in experiment …
12:56 PM Tickets #1380,​1381 batch updated by Nicklas Nordborg
fixed: (In [5111]) Fixes #1380 and #1381: Customize visible reporter fields …
12:39 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) closed by Nicklas Nordborg
worksforme: No, the description in the posted image is not expected to be hidden. …
11:55 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) reopened by Johan Vallon-Christersson

Sep 29, 2009:

12:25 PM Changeset [5110] by jari
Added entry to the FAQ.
11:31 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) closed by Nicklas Nordborg
wontfix: This is a standardized message appearing at all places were no plug-in …
11:21 AM Changeset [5109] by Nicklas Nordborg
Fixes #1390: Annotation groups should be sorted according to title
11:21 AM Ticket #1390 (Annotation groups should be sorted according to title) closed by Nicklas Nordborg
fixed: (In [5109]) Fixes #1390: Annotation groups should be sorted according …
11:10 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) created by jari
The message says […] The issue is really that BASE cannot find any …
11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) created by Nicklas Nordborg
The annotation groups are sorted in a semi-random order. The order …
11:04 AM Changeset [5108] by Nicklas Nordborg
Fixes #1389: Cache annotation summary groups in experiment explorer
11:04 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by Nicklas Nordborg
fixed: (In [5108]) Fixes #1389: Cache annotation summary groups in experiment …
9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) created by Nicklas Nordborg
This may be related to #1387. Currently, new AnnotationSummary
9:49 AM Changeset [5107] by Nicklas Nordborg
Fixes #1388: Display the count for each group in the annotation …
9:49 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) closed by Nicklas Nordborg
fixed: (In [5107]) Fixes #1388: Display the count for each group in the …
9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) created by Nicklas Nordborg
9:40 AM Tickets #1382,​1384 batch updated by Nicklas Nordborg
fixed: (In [5106]) Fixes #1382 and #1384: Move annotation summary selection …
9:40 AM Changeset [5106] by Nicklas Nordborg
Fixes #1382 and #1384: Move annotation summary selection and tables

Sep 28, 2009:

2:53 PM Changeset [5105] by Nicklas Nordborg
Fixes #1383: Make it possible to select more than one annotation in …
2:53 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) closed by Nicklas Nordborg
fixed: (In [5105]) Fixes #1383: Make it possible to select more than one …
11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) closed by Nicklas Nordborg
fixed: (In [5104]) Fixes #1372: Item link in the 'Overview' tab should use …
11:39 AM Changeset [5104] by Nicklas Nordborg
Fixes #1372: Item link in the 'Overview' tab should use the regular …
10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) closed by Nicklas Nordborg
fixed: (In [5103]) Fixes #1379: Change default minimum intensity value and …
10:45 AM Changeset [5103] by Nicklas Nordborg
Fixes #1379: Change default minimum intensity value and add support …
9:02 AM Ticket #1368 (Reload permissions when the refresh button is clicked) closed by Nicklas Nordborg
wontfix: This is the use case that lead to the 'Reload permissions' function …
8:33 AM Ticket #1375 (Improve experiment explorer display) closed by Nicklas Nordborg
duplicate: This ticket has been split into several new tickets as outlined in the …
8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) created by Nicklas Nordborg
Experiment explorer is still slow (cf ticket:903) and more performance …
8:30 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) created by Nicklas Nordborg
A plot button in bioassay list header. 1. The plot should display …
8:28 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) created by Nicklas Nordborg
A plot button in annotation summary table. The plot should be a box …
8:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) created by Nicklas Nordborg
The annotation summary table should be created to the right of the …
8:25 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) created by Nicklas Nordborg
The annotation summary dropdown should be a selection where the user …
8:24 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) created by Nicklas Nordborg
Annotation summary dropdown menu should be moved between reporter …
8:21 AM Ticket #1381 (Trunkate long strings in experiment explorer) created by Nicklas Nordborg
The displayed reporter annotation fields should be truncated as …
8:19 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) created by Nicklas Nordborg
The reporter annotation information display (Reporter View tab) should …
8:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) closed by Nicklas Nordborg
fixed: (In [5102]) Fixes #1373: Permission denied exception when viewing item …
8:09 AM Changeset [5102] by Nicklas Nordborg
Fixes #1373: Permission denied exception when viewing item that has …

Sep 23, 2009:

1:21 PM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) created by jari
In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup …
11:34 AM DownloadPage edited by jari
Updated link for BASE 1.2 download (diff)

Sep 22, 2009:

10:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) created by jari
Related to ticket:1279 When a BASE1 plug-in stores result files the …

Sep 18, 2009:

11:29 AM Ticket #1377 (Filter item lists on the 'Shared to' column) created by jari
... we simply need such a feature.
9:55 AM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) created by jari
The directories should only be created if needed. All BASE1 plug-ins …

Sep 17, 2009:

3:07 PM Ticket #1375 (Improve experiment explorer display) created by jari
This ticket can be split to several tickets but we choose to write …
11:31 AM Ticket #1374 (Caching of experimental factors) created by jari
The experiment properties view takes a long time to appear when there …
11:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) created by jari
The scenario: UserA has a rawbioassay RBA derived from SampleA (path: …
10:48 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) created by jari
I have a suggestion to a small behaviour change in the GUI. …

Sep 15, 2009:

8:22 AM Changeset [5101] by Nicklas Nordborg
References #1366: Manual transform creator should have option to …
8:12 AM Ticket #1371 (Update the database overview) closed by Nicklas Nordborg
fixed: (In [5100]) Fixes #1371: Update the database overview
8:12 AM Changeset [5100] by Nicklas Nordborg
Fixes #1371: Update the database overview
7:50 AM Ticket #1371 (Update the database overview) created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/latest/html/developerdoc/api/api_ove

Sep 14, 2009:

12:14 PM Changeset [5099] by Nicklas Nordborg
Fixes #1370: The <base:icon> taglib should support absolute image url:s
12:14 PM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) closed by Nicklas Nordborg
fixed: (In [5099]) Fixes #1370: The <base:icon> taglib should support …
11:24 AM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) created by Nicklas Nordborg
This taglib currently assumes that all images are in the …
8:46 AM Changeset [5098] by Nicklas Nordborg
Fixes #1369: A new array design does not get a registered date No …
8:46 AM Ticket #1369 (A new array design does not get a registered date) closed by Nicklas Nordborg
fixed: (In [5098]) Fixes #1369: A new array design does not get a registered …
8:44 AM Changeset [5097] by Nicklas Nordborg
Fixes #1367: Changing permissions on an item should trigger a reload …
8:44 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) closed by Nicklas Nordborg
fixed: (In [5097]) Fixes #1367: Changing permissions on an item should …
8:29 AM Changeset [5096] by Nicklas Nordborg
Fixes #1366: Manual transform creator should have option to import …
8:29 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) closed by Nicklas Nordborg
fixed: (In [5096]) Fixes #1366: Manual transform creator should have option …
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