Timeline
Oct 1, 2009:
- 9:38 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- It's better to use the 'string' annotation type if there is only 10 …
- 7:13 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- Replying to nicklas: > Hmmm.... the function to …
- 4:40 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) updated by
- Hmmm.... the function to automatically inherit annotation builds on …
- 3:56 PM Ticket #1394 (Inherit annotations (Experimental factors) not available for ...) created by
- The functionality that allow rawbioassays to inherit experimental …
- 3:27 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- It is something on the server side. I made a test on the production …
- 2:31 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
-
Description changed
- 2:29 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- Tested with an UTF-8 encoded file and there is no problem with it …
- 2:15 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) updated by
- Hmmm... I just realized that checking the number of bytes …
- 1:35 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: Perhaps then provide the option to …
- 1:19 PM Ticket #1393 (The "Edit file" function should check the size after loading/before saving) created by
- The "Edit file" function is useful for editing text files below 100kb …
- 1:14 PM Ticket #1392 (Incorrect warning about non-default platform/variant from validator) created by
- Setup a project and an array design as follows: * Create a new …
- 12:05 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Regarding the plot. It is still only a quick-and-dirty with lots of …
- 11:50 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: > 2. Create one series for each …
- 11:40 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Replying to nicklas: > There are two options: > I'm in …
- 11:01 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Hmmm... I just also realized that we do not force bioassay names to …
- 10:57 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Good news! JFreeChart can provide pixel coordinate information and it …
Sep 30, 2009:
- 1:23 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
-
Milestone, Status, Owner changed
The plot itself should not be too difficult to create. The colored … - 12:56 PM Changeset [5111] by
- Fixes #1380 and #1381: Customize visible reporter fields in experiment …
- 12:56 PM Tickets #1380,1381 batch updated by
- fixed: (In [5111]) Fixes #1380 and #1381: Customize visible reporter fields …
- 12:39 PM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) closed by
- worksforme: No, the description in the posted image is not expected to be hidden. …
- 11:55 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) reopened by
- 11:54 AM Ticket #1347 (Enable Appearance feature 'Display long text' in Experiment - ...) updated by
- Replying to nicklas: > This already works for me in …
- 11:33 AM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) updated by
- Replying to nicklas: > If we are going to do this it …
Sep 29, 2009:
- 12:33 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > I don't think it matters …
- 12:28 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Beautiful!
- 12:25 PM Changeset [5110] by
- Added entry to the FAQ.
- 12:12 PM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) updated by
- Hm, I suppose this should enter the FAQ section.
- 11:31 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) closed by
- wontfix: This is a standardized message appearing at all places were no plug-in …
- 11:21 AM Changeset [5109] by
- Fixes #1390: Annotation groups should be sorted according to title
- 11:21 AM Ticket #1390 (Annotation groups should be sorted according to title) closed by
- fixed: (In [5109]) Fixes #1390: Annotation groups should be sorted according …
- 11:10 AM Ticket #1391 (The import button in experiment overview when all raw bioassays are ...) created by
- The message says […] The issue is really that BASE cannot find any …
- 11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) updated by
-
Status, Owner changed
- 11:06 AM Ticket #1390 (Annotation groups should be sorted according to title) created by
- The annotation groups are sorted in a semi-random order. The order …
- 11:04 AM Changeset [5108] by
- Fixes #1389: Cache annotation summary groups in experiment explorer
- 11:04 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) closed by
- fixed: (In [5108]) Fixes #1389: Cache annotation summary groups in experiment …
- 10:43 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- I don't think it matters implementation-wise. The current column …
- 10:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Replying to nicklas: The text itself should of course not …
- 10:12 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > > To have it synchronized makes a …
- 9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) updated by
-
Status, Owner changed
- 9:53 AM Ticket #1389 (Cache annotation summary groups in experiment explorer) created by
-
This may be related to #1387.
Currently, new
AnnotationSummary… - 9:49 AM Changeset [5107] by
- Fixes #1388: Display the count for each group in the annotation …
- 9:49 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) closed by
- fixed: (In [5107]) Fixes #1388: Display the count for each group in the …
- 9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) updated by
-
Owner, Status changed
- 9:41 AM Ticket #1388 (Display the count for each group in the annotation summary in ...) created by
- 9:40 AM Tickets #1382,1384 batch updated by
- fixed: (In [5106]) Fixes #1382 and #1384: Move annotation summary selection …
- 9:40 AM Changeset [5106] by
- Fixes #1382 and #1384: Move annotation summary selection and tables
- 8:41 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) updated by
-
Owner, Status changed
- 8:41 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
-
Owner, Status changed
Sep 28, 2009:
- 7:11 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- I don't think it is possible to have vertically oriented text in the …
- 7:08 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- > To have it synchronized makes a lot of sense since there would be no …
- 6:23 PM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
- Replying to nicklas: > I am not sure I like this idea... …
- 5:26 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Replying to nicklas: > Should this be synchronized with …
- 4:09 PM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- Example in pdf file
- 3:16 PM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- Added a pdf with some descriptions and manually created example plots.
- 2:53 PM Changeset [5105] by
- Fixes #1383: Make it possible to select more than one annotation in …
- 2:53 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) closed by
- fixed: (In [5105]) Fixes #1383: Make it possible to select more than one …
- 12:33 PM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) updated by
-
Status, Owner changed
- 12:33 PM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
- Should this be synchronized with the columns in the "Reporter search" …
- 11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) closed by
- fixed: (In [5104]) Fixes #1372: Item link in the 'Overview' tab should use …
- 11:39 AM Changeset [5104] by
- Fixes #1372: Item link in the 'Overview' tab should use the regular …
- 11:39 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) updated by
-
Summary, Owner, Status changed
- 10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) closed by
- fixed: (In [5103]) Fixes #1379: Change default minimum intensity value and …
- 10:45 AM Changeset [5103] by
- Fixes #1379: Change default minimum intensity value and add support …
- 10:45 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) updated by
-
Summary changed
- 10:14 AM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) updated by
-
Status, Owner changed
- 9:04 AM Ticket #1325 (Lists of items (similar funcion as biomaterial lists)) updated by
- If we are going to do this it should be a generic 'list-of-items' …
- 9:02 AM Ticket #1368 (Reload permissions when the refresh button is clicked) closed by
- wontfix: This is the use case that lead to the 'Reload permissions' function …
- 8:59 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
-
Milestone changed
I am not sure I like this idea... The table with spot data can grow a … - 8:56 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
-
Milestone changed
- 8:55 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) updated by
-
Milestone changed
- 8:54 AM Ticket #1381 (Trunkate long strings in experiment explorer) updated by
-
Milestone changed
- 8:53 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) updated by
-
Milestone changed
This should be rather simple to fix. … - 8:45 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) updated by
-
Summary changed
- 8:44 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) updated by
- I don't understand what kind of plot you would like. Please specify …
- 8:43 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) updated by
- I am not sure that I understand what it is you would like to plot. Is …
- 8:39 AM Ticket #1387 (More performance enhancements needed for experiment explorer) updated by
- Ticket #903 made lots of improvements to the experiment explorer. …
- 8:38 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
- Replying to nicklas: > This is not really related to …
- 8:33 AM Ticket #1375 (Improve experiment explorer display) closed by
- duplicate: This ticket has been split into several new tickets as outlined in the …
- 8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) updated by
-
Description changed
- 8:31 AM Ticket #1387 (More performance enhancements needed for experiment explorer) created by
- Experiment explorer is still slow (cf ticket:903) and more performance …
- 8:30 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:30 AM Ticket #1386 (Plot function in the bioassay table in experiment explorer) created by
- A plot button in bioassay list header. 1. The plot should display …
- 8:29 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:28 AM Ticket #1385 (Plot function in the annotation summary table in experiment explorer) created by
- A plot button in annotation summary table. The plot should be a box …
- 8:26 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:26 AM Ticket #1384 (Move the annotation summary information table in experiment explorer) created by
- The annotation summary table should be created to the right of the …
- 8:25 AM Ticket #1383 (Make it possible to select more than one annotation in experiment explorer) created by
- The annotation summary dropdown should be a selection where the user …
- 8:24 AM Ticket #1382 (Move the annotation summary selection list in experiment explorer) created by
- Annotation summary dropdown menu should be moved between reporter …
- 8:22 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:21 AM Ticket #1375 (Improve experiment explorer display) updated by
-
Description changed
- 8:21 AM Ticket #1381 (Trunkate long strings in experiment explorer) created by
- The displayed reporter annotation fields should be truncated as …
- 8:20 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) updated by
-
Description changed
- 8:19 AM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) updated by
- Replying to nicklas: > I don't understand the request... …
- 8:19 AM Ticket #1380 (Customize visible reporter fields in experiment explorer) created by
- The reporter annotation information display (Reporter View tab) should …
- 8:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) updated by
- This is not really related to #1279. The directory in question is not …
- 8:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) closed by
- fixed: (In [5102]) Fixes #1373: Permission denied exception when viewing item …
- 8:09 AM Changeset [5102] by
- Fixes #1373: Permission denied exception when viewing item that has …
- 7:53 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
-
Summary changed
- 7:51 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
-
Status, Owner changed
Sep 25, 2009:
- 3:24 PM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) updated by
-
Milestone, Type changed
Hmmm... the problem seems to be in the list_annotations.jsp script … - 2:34 PM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) updated by
- I don't understand the request... The directory is always needed, …
Sep 23, 2009:
- 1:21 PM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) created by
- In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup …
- 11:34 AM DownloadPage edited by
- Updated link for BASE 1.2 download (diff)
Sep 22, 2009:
- 10:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) created by
- Related to ticket:1279 When a BASE1 plug-in stores result files the …
Sep 18, 2009:
- 11:43 AM Ticket #1377 (Filter item lists on the 'Shared to' column) updated by
- Sorting is not possible to implement since an item may be shared to …
- 11:29 AM Ticket #1377 (Filter item lists on the 'Shared to' column) created by
- ... we simply need such a feature.
- 9:55 AM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) created by
- The directories should only be created if needed. All BASE1 plug-ins …
Sep 17, 2009:
- 3:07 PM Ticket #1375 (Improve experiment explorer display) created by
- This ticket can be split to several tickets but we choose to write …
- 11:31 AM Ticket #1374 (Caching of experimental factors) created by
- The experiment properties view takes a long time to appear when there …
- 11:18 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) updated by
- There is a reason for this. The view pages will replace the overview …
- 11:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) created by
- The scenario: UserA has a rawbioassay RBA derived from SampleA (path: …
- 10:48 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) created by
- I have a suggestion to a small behaviour change in the GUI. …
Sep 15, 2009:
- 8:22 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by
- (In [5101]) References #1366: Manual transform creator should have …
- 8:22 AM Changeset [5101] by
- References #1366: Manual transform creator should have option to …
- 8:12 AM Ticket #1371 (Update the database overview) closed by
- fixed: (In [5100]) Fixes #1371: Update the database overview
- 8:12 AM Changeset [5100] by
- Fixes #1371: Update the database overview
- 7:50 AM Ticket #1371 (Update the database overview) updated by
-
Status, Owner changed
- 7:50 AM Ticket #1371 (Update the database overview) created by
- http://base.thep.lu.se/chrome/site/latest/html/developerdoc/api/api_ove …
Sep 14, 2009:
- 12:14 PM Changeset [5099] by
- Fixes #1370: The <base:icon> taglib should support absolute image url:s
- 12:14 PM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) closed by
- fixed: (In [5099]) Fixes #1370: The <base:icon> taglib should support …
- 11:24 AM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) updated by
-
Owner, Status changed
- 11:24 AM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) created by
- This taglib currently assumes that all images are in the …
- 10:45 AM Ticket #1369 (A new array design does not get a registered date) updated by
- Replying to nicklas: > No problem with the RawBioAssay …
- 8:46 AM Changeset [5098] by
- Fixes #1369: A new array design does not get a registered date No …
- 8:46 AM Ticket #1369 (A new array design does not get a registered date) closed by
- fixed: (In [5098]) Fixes #1369: A new array design does not get a registered …
- 8:44 AM Changeset [5097] by
- Fixes #1367: Changing permissions on an item should trigger a reload …
- 8:44 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) closed by
- fixed: (In [5097]) Fixes #1367: Changing permissions on an item should …
- 8:29 AM Changeset [5096] by
- Fixes #1366: Manual transform creator should have option to import …
- 8:29 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) closed by
- fixed: (In [5096]) Fixes #1366: Manual transform creator should have option …
Sep 11, 2009:
- 11:50 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by
- Hmmm... there is an unexpected problem. The importer created in #1365 …
- 8:51 AM Changeset [5095] by
- References #1365: Move BASEFile import code to a separate class …
- 8:51 AM Ticket #1365 (Move BASEFile import code to a separate class) updated by
- (In [5095]) References #1365: Move BASEFile import code to a separate …
Sep 10, 2009:
- 3:22 PM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by
-
Status, Owner changed
- 2:38 PM Tickets #1365,741 batch updated by
- (In [5094]) References #741 and #1365 Missed this file in [5093]
- 2:38 PM Changeset [5094] by
- References #741 and #1365 Missed this file in [5093]
- 2:36 PM Changeset [5093] by
- Fixes #1365: Move BASEFile import code to a separate class References …
- 2:36 PM Tickets #1365,741 batch updated by
- (In [5093]) Fixes #1365: Move BASEFile import code to a separate class …
- 10:24 AM Ticket #1369 (A new array design does not get a registered date) updated by
-
Component changed
It seems like this problem happens when selecting a platform with a …
Sep 9, 2009:
- 2:51 PM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by
- Then the reload function needs a complete redesign. Currently it is …
- 2:01 PM Ticket #1369 (A new array design does not get a registered date) updated by
- Hm, interesting. Check out 'noregdate design' owned by my admin account.
- 1:58 PM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by
- Replying to nicklas: > Will this really be necessary if …
- 11:54 AM Ticket #1369 (A new array design does not get a registered date) updated by
- It seems to work on the production server also. Look at the 'Test of …
- 11:36 AM Ticket #1369 (A new array design does not get a registered date) updated by
- Replying to nicklas: > I can't reproduce this. It works …
- 11:19 AM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by
- Will this really be necessary if #1367 is fixed?
- 11:16 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) updated by
-
Type, Summary changed
The "Reload permissions" function was implemented to solve exactly … - 11:10 AM Ticket #1369 (A new array design does not get a registered date) updated by
- I can't reproduce this. It works just fine when I try it in BASE 2.13.
- 10:10 AM Ticket #1369 (A new array design does not get a registered date) created by
- I am adding a new array design but there is no registered date …
- 9:57 AM Ticket #1368 (Reload permissions when the refresh button is clicked) created by
- In many cases the permissions are confusing for the users and users do …
- 9:54 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) created by
- The problem is straightforward; Create an item and share it to a …
Sep 8, 2009:
- 9:25 AM Changeset [5092] by
- Added 2009 to copyright
Sep 1, 2009:
- 11:27 AM Ticket #1365 (Move BASEFile import code to a separate class) updated by
-
Status, Owner changed
- 11:26 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) created by
- If a manual transform generates either a serial or matrix BASEfile …
- 11:24 AM Ticket #1365 (Move BASEFile import code to a separate class) created by
-
This code is currently in the
Base1PluginExecuteras a private …
Note:
See TracTimeline
for information about the timeline view.
