Timeline



Sep 23, 2009:

1:21 PM Ticket #1379 (Change default minimum intensity value and add support for 0=all ...) created by Jari Häkkinen
In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup …
11:34 AM DownloadPage edited by Jari Häkkinen
Updated link for BASE 1.2 download (diff)

Sep 22, 2009:

10:16 AM Ticket #1378 (Base1PluginExecuter should link the result directory with the ...) created by Jari Häkkinen
Related to ticket:1279 When a BASE1 plug-in stores result files the …

Sep 18, 2009:

11:43 AM Ticket #1377 (Filter item lists on the 'Shared to' column) updated by Nicklas Nordborg
Sorting is not possible to implement since an item may be shared to …
11:29 AM Ticket #1377 (Filter item lists on the 'Shared to' column) created by Jari Häkkinen
... we simply need such a feature.
9:55 AM Ticket #1376 (Remove the working directory (in the BASE file system) that ...) created by Jari Häkkinen
The directories should only be created if needed. All BASE1 plug-ins …

Sep 17, 2009:

3:07 PM annotations_summary.png attached to Ticket #1375 by Jari Häkkinen
3:07 PM Ticket #1375 (Improve experiment explorer display) created by Jari Häkkinen
This ticket can be split to several tickets but we choose to write …
11:31 AM Ticket #1374 (Caching of experimental factors) created by Jari Häkkinen
The experiment properties view takes a long time to appear when there …
11:18 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) updated by Nicklas Nordborg
There is a reason for this. The view pages will replace the overview …
11:09 AM Ticket #1373 (Permission denied exception when viewing item that has inherited an ...) created by Jari Häkkinen
The scenario: UserA has a rawbioassay RBA derived from SampleA (path: …
10:48 AM Ticket #1372 (Item link in the 'Overview' tab should use the regular click-to-view ...) created by Jari Häkkinen
I have a suggestion to a small behaviour change in the GUI. …

Sep 15, 2009:

8:22 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by Nicklas Nordborg
(In [5101]) References #1366: Manual transform creator should have …
8:22 AM Changeset [5101] by Nicklas Nordborg
References #1366: Manual transform creator should have option to …
8:12 AM Ticket #1371 (Update the database overview) closed by Nicklas Nordborg
fixed: (In [5100]) Fixes #1371: Update the database overview
8:12 AM Changeset [5100] by Nicklas Nordborg
Fixes #1371: Update the database overview
7:50 AM Ticket #1371 (Update the database overview) updated by Nicklas Nordborg
Owner, Status changed
7:50 AM Ticket #1371 (Update the database overview) created by Nicklas Nordborg
http://base.thep.lu.se/chrome/site/latest/html/developerdoc/api/api_ove

Sep 14, 2009:

12:14 PM Changeset [5099] by Nicklas Nordborg
Fixes #1370: The <base:icon> taglib should support absolute image url:s
12:14 PM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) closed by Nicklas Nordborg
fixed: (In [5099]) Fixes #1370: The <base:icon> taglib should support …
11:24 AM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) updated by Nicklas Nordborg
Owner, Status changed
11:24 AM Ticket #1370 (The <base:icon> taglib should support absolute image url:s) created by Nicklas Nordborg
This taglib currently assumes that all images are in the …
10:45 AM Ticket #1369 (A new array design does not get a registered date) updated by Jari Häkkinen
Replying to nicklas: > No problem with the RawBioAssay …
8:46 AM Changeset [5098] by Nicklas Nordborg
Fixes #1369: A new array design does not get a registered date No …
8:46 AM Ticket #1369 (A new array design does not get a registered date) closed by Nicklas Nordborg
fixed: (In [5098]) Fixes #1369: A new array design does not get a registered …
8:44 AM Changeset [5097] by Nicklas Nordborg
Fixes #1367: Changing permissions on an item should trigger a reload …
8:44 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) closed by Nicklas Nordborg
fixed: (In [5097]) Fixes #1367: Changing permissions on an item should …
8:29 AM Changeset [5096] by Nicklas Nordborg
Fixes #1366: Manual transform creator should have option to import …
8:29 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) closed by Nicklas Nordborg
fixed: (In [5096]) Fixes #1366: Manual transform creator should have option …

Sep 11, 2009:

11:50 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by Nicklas Nordborg
Hmmm... there is an unexpected problem. The importer created in #1365
8:51 AM Changeset [5095] by Nicklas Nordborg
References #1365: Move BASEFile import code to a separate class …
8:51 AM Ticket #1365 (Move BASEFile import code to a separate class) updated by Nicklas Nordborg
(In [5095]) References #1365: Move BASEFile import code to a separate …

Sep 10, 2009:

3:22 PM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) updated by Nicklas Nordborg
Owner, Status changed
2:38 PM Tickets #1365,​741 batch updated by Nicklas Nordborg
(In [5094]) References #741 and #1365 Missed this file in [5093]
2:38 PM Changeset [5094] by Nicklas Nordborg
References #741 and #1365 Missed this file in [5093]
2:36 PM Changeset [5093] by Nicklas Nordborg
Fixes #1365: Move BASEFile import code to a separate class References …
2:36 PM Tickets #1365,​741 batch updated by Nicklas Nordborg
(In [5093]) Fixes #1365: Move BASEFile import code to a separate class …
10:24 AM Ticket #1369 (A new array design does not get a registered date) updated by Nicklas Nordborg
Component changed
It seems like this problem happens when selecting a platform with a …

Sep 9, 2009:

2:51 PM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by Nicklas Nordborg
Then the reload function needs a complete redesign. Currently it is …
2:01 PM Ticket #1369 (A new array design does not get a registered date) updated by Jari Häkkinen
Hm, interesting. Check out 'noregdate design' owned by my admin account.
1:58 PM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by Jari Häkkinen
Replying to nicklas: > Will this really be necessary if …
11:54 AM Ticket #1369 (A new array design does not get a registered date) updated by Nicklas Nordborg
It seems to work on the production server also. Look at the 'Test of …
11:36 AM Ticket #1369 (A new array design does not get a registered date) updated by Jari Häkkinen
Replying to nicklas: > I can't reproduce this. It works …
11:19 AM Ticket #1368 (Reload permissions when the refresh button is clicked) updated by Nicklas Nordborg
Will this really be necessary if #1367 is fixed?
11:16 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) updated by Nicklas Nordborg
Summary, Type changed
The "Reload permissions" function was implemented to solve exactly …
11:10 AM Ticket #1369 (A new array design does not get a registered date) updated by Nicklas Nordborg
I can't reproduce this. It works just fine when I try it in BASE 2.13.
10:10 AM Ticket #1369 (A new array design does not get a registered date) created by Jari Häkkinen
I am adding a new array design but there is no registered date …
9:57 AM Ticket #1368 (Reload permissions when the refresh button is clicked) created by Jari Häkkinen
In many cases the permissions are confusing for the users and users do …
9:54 AM Ticket #1367 (Changing permissions on an item should trigger a reload of the cached ...) created by Jari Häkkinen
The problem is straightforward; Create an item and share it to a …

Sep 8, 2009:

9:25 AM Changeset [5092] by Jari Häkkinen
Added 2009 to copyright

Sep 1, 2009:

11:27 AM Ticket #1365 (Move BASEFile import code to a separate class) updated by Nicklas Nordborg
Status, Owner changed
11:26 AM Ticket #1366 (Manual transform creator should have option to import data from BASEfile:s) created by Nicklas Nordborg
If a manual transform generates either a serial or matrix BASEfile …
11:24 AM Ticket #1365 (Move BASEFile import code to a separate class) created by Nicklas Nordborg
This code is currently in the Base1PluginExecuter as a private …

Aug 31, 2009:

11:21 AM Milestone BASE 2.13 completed
11:21 AM Changeset [5091] by Nicklas Nordborg
Merged pre-2.13-releases to the trunk.
11:10 AM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.13 (diff)
11:05 AM Changeset [5090] by Nicklas Nordborg
Changes for future release 2.13.1
9:44 AM Changeset [5089] by Nicklas Nordborg
Tagging version 2.13
9:43 AM Changeset [5088] by Nicklas Nordborg
Preparing release 2.13
9:41 AM Ticket #1350 (Update to Hibernate 3.3.2) closed by Nicklas Nordborg
fixed: Closing this, but we should upgrade Hibernate as soon as HHH-4065 is …
9:40 AM Ticket #1364 (Update Hibernate when HHH-4065 has been fixed) created by Nicklas Nordborg
The update to Hibernate 3.3.2 in #1350 had a nasty bug as a …
9:36 AM Ticket #108 (Logging the change history of an item) closed by Nicklas Nordborg
fixed
9:35 AM Ticket #1363 (IE8 problems (javascript, etc)) closed by Nicklas Nordborg
fixed: The rest of the test procedure has been completed without problems. …
9:33 AM Changeset [5087] by Nicklas Nordborg
References #1302: Overview plots and correction factor plots as …
9:33 AM Ticket #1302 (Overview plots and correction factor plots as extension) updated by Nicklas Nordborg
(In [5087]) References #1302: Overview plots and correction factor …
8:20 AM Changeset [5086] by Nicklas Nordborg
References #1281: Change display-format of Biowell coordinates …
8:20 AM Ticket #1281 (Change display-format of Biowell coordinates) updated by Nicklas Nordborg
(In [5086]) References #1281: Change display-format of Biowell …

Aug 28, 2009:

2:11 PM Changeset [5085] by Nicklas Nordborg
References #1363: IE8 problems Fixes a problem with detecting and …
2:11 PM Ticket #1363 (IE8 problems (javascript, etc)) updated by Nicklas Nordborg
(In [5085]) References #1363: IE8 problems Fixes a problem with …
1:50 PM Changeset [5084] by Nicklas Nordborg
References #1363: IE8 problems Fixes a problem with positioning popup …
1:50 PM Ticket #1363 (IE8 problems (javascript, etc)) updated by Nicklas Nordborg
(In [5084]) References #1363: IE8 problems Fixes a problem with …
1:44 PM Changeset [5083] by Nicklas Nordborg
References #1363: IE8 problems Fixes a problem with remembering tabs …
1:44 PM Ticket #1363 (IE8 problems (javascript, etc)) updated by Nicklas Nordborg
(In [5083]) References #1363: IE8 problems Fixes a problem with …
11:01 AM Ticket #1363 (IE8 problems (javascript, etc)) updated by Nicklas Nordborg
(In [5082]) References #1363: IE8 problems It seems like it is no …
11:01 AM Changeset [5082] by Nicklas Nordborg
References #1363: IE8 problems It seems like it is no longer safe to …
10:36 AM Ticket #1363 (IE8 problems (javascript, etc)) updated by Nicklas Nordborg
Status, Owner changed
9:43 AM Ticket #1363 (IE8 problems (javascript, etc)) created by Nicklas Nordborg
There seems to be some problems with IE8 that didn't exist in IE7. …

Aug 27, 2009:

1:08 PM Changeset [5081] by Nicklas Nordborg
References #1362: Validate the number of raw data spots against the …
1:08 PM Ticket #1362 (Validate the number of raw data spots against the number of array ...) updated by Nicklas Nordborg
(In [5081]) References #1362: Validate the number of raw data spots …
11:13 AM Changeset [5080] by Nicklas Nordborg
References #1182: Groups with hidden members Fixed a query problem …
11:13 AM Ticket #1182 (Groups with hidden members) updated by Nicklas Nordborg
(In [5080]) References #1182: Groups with hidden members Fixed a …
8:36 AM Changeset [5079] by Nicklas Nordborg
Changes for future release 2.14
8:35 AM Changeset [5078] by Nicklas Nordborg
Forking new minor version 2.13 branch

Aug 26, 2009:

2:03 PM Ticket #1182 (Groups with hidden members) closed by Nicklas Nordborg
fixed: (In [5077]) Fixes #1182: Groups with hidden members
2:03 PM Changeset [5077] by Nicklas Nordborg
Fixes #1182: Groups with hidden members
11:23 AM Ticket #1182 (Groups with hidden members) updated by Nicklas Nordborg
Status, Owner, Milestone, Summary changed
I am thinking that this may not be impossible after all... I have read …

Aug 25, 2009:

11:15 AM Changeset [5076] by Nicklas Nordborg
Fixes #1362: Validate the number of raw data spots against the number …
11:15 AM Ticket #1362 (Validate the number of raw data spots against the number of array ...) closed by Nicklas Nordborg
fixed: (In [5076]) Fixes #1362: Validate the number of raw data spots against …

Aug 24, 2009:

1:32 PM Ticket #1362 (Validate the number of raw data spots against the number of array ...) updated by Nicklas Nordborg
Status, Owner changed
1:05 PM Ticket #1361 (Unhandled item: ANNOTATION) closed by Nicklas Nordborg
fixed: (In [5075]) Fixes #1361: Unhandled item: ANNOTATION The only "issue" …
1:05 PM Changeset [5075] by Nicklas Nordborg
Fixes #1361: Unhandled item: ANNOTATION The only "issue" is that …
1:00 PM Ticket #1361 (Unhandled item: ANNOTATION) updated by Nicklas Nordborg
Owner, Status, Summary changed
11:19 AM Changeset [5074] by Nicklas Nordborg
Fixes #1360: Existing annotatation on an item may not be …
11:19 AM Ticket #1360 (Existing annotatation on an item may not be visible/editable in some cases) closed by Nicklas Nordborg
fixed: (In [5074]) Fixes #1360: Existing annotatation on an item may not be …
11:17 AM Ticket #1360 (Existing annotatation on an item may not be visible/editable in some cases) updated by Nicklas Nordborg
Summary changed
8:31 AM Ticket #1362 (Validate the number of raw data spots against the number of array ...) created by Nicklas Nordborg
In some cases the number of raw data spots imported to a raw bioassay …
8:23 AM Ticket #1361 (Unhandled item: ANNOTATION) updated by Nicklas Nordborg
Milestone changed
Thanks. It seems like annotations need special handling in the …
8:18 AM Ticket #1360 (Existing annotatation on an item may not be visible/editable in some cases) updated by Nicklas Nordborg
Owner, Description, Milestone, Status changed
This is not the desired behaviour. I think it is something that …
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