Timeline



Oct 16, 2008:

10:37 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) updated by Nicklas Nordborg
Milestone changed
No, anything created by a transformation is softly linked using …
10:30 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Nicklas Nordborg
Could it be that someone else has deleted the dependency while you …
10:26 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) updated by Nicklas Nordborg
Milestone changed
The trashcan is already "smart" when the items are in a tree. It will …
10:06 PM Ticket #1149 (Mark related items for removal when "parent" item is marked for removal) created by Jari Häkkinen
When a transformation is deleted in the analysis view the created …
10:01 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) updated by Jari Häkkinen
Why is there a dependency icon at the first place? There is no …
9:57 PM Ticket #1148 (Removing items from trashcan when circular references exists ...) created by Jari Häkkinen
is probably not easy. However, when an item is blocked by another item …
9:48 PM Ticket #1147 (Incorrect result from isUsed() method prevents deletion of some items) created by Jari Häkkinen
The trashcan view shows the dependency icon for the item but clicking …
9:26 PM Changeset [4590] by Jari Häkkinen
Fixed typo.
1:23 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) closed by Nicklas Nordborg
fixed: (In [4589]) Fixes #1146: updateindexes.sh should create indexes for …
1:23 PM Changeset [4589] by Nicklas Nordborg
Fixes #1146: updateindexes.sh should create indexes for foreign keys
12:16 PM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) updated by Nicklas Nordborg
Status, Owner changed
12:13 PM Changeset [4588] by Martin Svensson
Fixes #1136 Give away/set owner of items
12:13 PM Ticket #1136 (Give away/set owner of items) closed by Martin Svensson
fixed: (In [4588]) Fixes #1136 Give away/set owner of items
11:25 AM Ticket #1146 (updateindexes.sh should create indexes for foreign keys) created by Nicklas Nordborg
MySQL automatically generates an index on all foreign key columns, but …
11:04 AM Ticket #1145 (Make the generic raw data importer support batch import) updated by Nicklas Nordborg
Status changed
8:31 AM Ticket #1145 (Make the generic raw data importer support batch import) created by Nicklas Nordborg
This ticket replaces #1135. The multi-import feature should be …
8:28 AM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) updated by Nicklas Nordborg
Owner, Milestone, Status changed
It doesn't work! The Plugin API has not been design for a plug-in …

Oct 15, 2008:

4:40 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4587]) References #1136 Change to fit all jsp-pages, including …
4:40 PM Changeset [4587] by Martin Svensson
References #1136 Change to fit all jsp-pages, including files, and …
3:14 PM Changeset [4586] by Nicklas Nordborg
This directory was added in [4574] by accident.
3:13 PM Changeset [4585] by Nicklas Nordborg
Merged patch release 2.8.3 to the trunk.
2:10 PM Milestone BASE 2.8.3 completed
Revision Log: log:branches/2.8-stable@4535:4583
2:10 PM DownloadPage edited by Nicklas Nordborg
Releasing BASE 2.8.3 (diff)
2:05 PM Changeset [4584] by Nicklas Nordborg
Changes for future release 2.8.4
1:44 PM Changeset [4583] by Nicklas Nordborg
Tagging version 2.8.3
1:43 PM Changeset [4582] by Nicklas Nordborg
Preparing release 2.8.3
1:41 PM Changeset [4581] by Nicklas Nordborg
Fixes #1144: Test program for Base1PluginExecuter doesn't report a failure
1:41 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) closed by Nicklas Nordborg
fixed: (In [4581]) Fixes #1144: Test program for Base1PluginExecuter doesn't …
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) updated by Nicklas Nordborg
Owner, Status changed
1:40 PM Ticket #1144 (Test program for Base1PluginExecuter doesn't report a failure) created by Nicklas Nordborg
I was running the test program on Windows which of course fails …
1:34 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
(In [4580]) References #1131: Permission problems creating a new …
1:34 PM Changeset [4580] by Nicklas Nordborg
References #1131: Permission problems creating a new directory in a …
1:10 PM Ticket #1143 (Problems with file browser and Internet Explorer) closed by Nicklas Nordborg
fixed: I have now verified the fix.

Oct 14, 2008:

9:46 AM Changeset [4579] by Nicklas Nordborg
References #1143: Problems with file browser and Internet Explorer I …
9:46 AM Ticket #1143 (Problems with file browser and Internet Explorer) updated by Nicklas Nordborg
(In [4579]) References #1143: Problems with file browser and Internet …
9:00 AM bild4.png attached to Ticket #1143 by Nicklas Nordborg
Filter for the "Type" column
9:00 AM bild3.png attached to Ticket #1143 by Nicklas Nordborg
Third error message
8:59 AM bild2.png attached to Ticket #1143 by Nicklas Nordborg
Second error message
8:59 AM bild1.png attached to Ticket #1143 by Nicklas Nordborg
First error message
8:59 AM Ticket #1143 (Problems with file browser and Internet Explorer) created by Nicklas Nordborg
We have been experiencing some intermittent and strange problems with …

Oct 13, 2008:

4:38 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4578]) References #1136 Updated most of the index-, view- and …
4:38 PM Changeset [4578] by Martin Svensson
References #1136 Updated most of the index-, view- and list-jsp pages …
11:38 AM Changeset [4577] by Nicklas Nordborg
References #792: Add support for units to annotation values Make it …
11:38 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4577]) References #792: Add support for units to annotation …
11:04 AM Ticket #1122 (News item sort order should be controllable) closed by Nicklas Nordborg
fixed: (In [4576]) Fixes #1122: News item sort order should be controllable
11:04 AM Changeset [4576] by Nicklas Nordborg
Fixes #1122: News item sort order should be controllable
10:57 AM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
Priority, Milestone changed
10:57 AM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
Status, Owner changed
Latest added should be displayed first
10:57 AM Changeset [4575] by Nicklas Nordborg
Fixes #1121: News item 'BASE Server installed' is created after …
10:57 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) closed by Nicklas Nordborg
fixed: (In [4575]) Fixes #1121: News item 'BASE Server installed' is created …
10:41 AM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) updated by Nicklas Nordborg
Owner, Milestone, Status changed
I'll move the news creation to the last step in the Install class.
9:53 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) updated by Nicklas Nordborg
My first approach was to simple filter away array slides that had …
9:52 AM Ticket #1142 (Batch importer plug-ins should handle lack of USE permission better) created by Nicklas Nordborg
The current implementation of the batch importer simply ignores all …
9:43 AM Changeset [4574] by Nicklas Nordborg
Fixes #1137: Importing hybridizations fail when association is tried …
9:43 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) closed by Nicklas Nordborg
fixed: (In [4574]) Fixes #1137: Importing hybridizations fail when …
7:56 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) updated by Nicklas Nordborg
Owner, Status changed

Oct 10, 2008:

4:37 PM Changeset [4573] by Martin Svensson
References #1136 Added ownership-jsppages and also started to updated …
4:37 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
(In [4573]) References #1136 Added ownership-jsppages and also started …
12:17 PM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) closed by Nicklas Nordborg
invalid: It is more or less impossible to delete the entries since there are …
11:47 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Jari Häkkinen
Replying to nicklas: > This works as expected in our test …
11:13 AM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) updated by Jari Häkkinen
Milestone changed
11:12 AM Ticket #1059 (JasperException: Unable to find setter method for attribute: direction ...) updated by Jari Häkkinen
Milestone changed

Oct 9, 2008:

2:56 PM Ticket #1141 (Spelling error for "Disk usage") closed by Nicklas Nordborg
fixed: (In [4572]) Fixes #1141: Spelling error for "Disk usage"
2:56 PM Changeset [4572] by Nicklas Nordborg
Fixes #1141: Spelling error for "Disk usage"
2:47 PM Ticket #1141 (Spelling error for "Disk usage") created by Nicklas Nordborg
It is spelled "Disc usage" in several places, for example in the role …
2:36 PM Changeset [4571] by Nicklas Nordborg
Fixes #1140: Unclosed DbControl
2:36 PM Ticket #1140 (Unclosed dbcontrol) closed by Nicklas Nordborg
fixed: (In [4571]) Fixes #1140: Unclosed DbControl
12:40 PM Ticket #1140 (Unclosed dbcontrol) updated by Martin Svensson
Description changed
12:40 PM Ticket #1140 (Unclosed dbcontrol) created by Martin Svensson
[…]
11:04 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) updated by Nicklas Nordborg
This works as expected in our test cases. Are you sure that the …
10:00 AM Ticket #1139 (Display the barcode for array slide in the hybridization information page) created by Jari Häkkinen
Currently the slide name is displayed on the hybridization information …
9:56 AM Ticket #1138 (SMART option for feature mismatch in rawbioassay import does not work) created by Jari Häkkinen
We have problems with the SMART option for feature mismatch error …
9:23 AM Ticket #1137 (Importing hybridizations fail when association is tried to a slide ...) created by Jari Häkkinen
Hybs and slides have a 1-to-1 relation so the problem is expected. …

Oct 8, 2008:

2:43 PM Ticket #1136 (Give away/set owner of items) updated by Martin Svensson
Status, Owner changed
2:35 PM Ticket #1125 (Replace existing file in file upload) closed by Martin Svensson
fixed: (In [4570]) Fixes #1125 Replace existing file in file upload
2:35 PM Changeset [4570] by Martin Svensson
Fixes #1125 Replace existing file in file upload
11:35 AM Ticket #1136 (Give away/set owner of items) updated by Nicklas Nordborg
I think the easiest way to implement this functionality is to change …
11:22 AM multi-rawdata-importer-1.txt attached to Ticket #1135 by Nicklas Nordborg
Implementation specifications v.1
10:20 AM Ticket #1136 (Give away/set owner of items) created by Jari Häkkinen
In ticket:348 take ownership was added to BASE, why is set ownership …
9:24 AM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) updated by Nicklas Nordborg
Summary, Owner, Status, Type changed
9:18 AM Changeset [4569] by Nicklas Nordborg
Fixes #1134: Raw bioassays are available for inclusion in root …
9:18 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #1134: Raw bioassays are available for inclusion in …
8:55 AM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Status, Owner changed
8:45 AM Ticket #1125 (Replace existing file in file upload) updated by Martin Svensson
Owner, Status changed

Oct 7, 2008:

10:42 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
I see no reason to go for a more complicated solution now, just add a …
8:24 PM Ticket #1129 (Filtering of child/parent items in table listing) updated by Nicklas Nordborg
Description changed
The root problem with this is the same as for #1128. The child items …
8:11 PM Ticket #1122 (News item sort order should be controllable) updated by Nicklas Nordborg
The date is stored as a date only, with no time information. Sorting …
8:09 PM Ticket #1121 (News item 'BASE Server installed' is created after running updatedb) updated by Nicklas Nordborg
Ah... this happens because the new item was deleted (or the title was …
8:02 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
If a note about the "missing raw bioassays" is enough, then it should …
4:03 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
The easy solution seems to be enough if we add a note in the raw …
3:54 PM Changeset [4568] by Martin Svensson
Fixes #1105 Automatically set "array design" on raw bioassay that has …
3:54 PM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) closed by Martin Svensson
fixed: (In [4568]) Fixes #1105 Automatically set "array design" on raw …
3:00 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Replying to jari: > Replying to nicklas: > > …
2:27 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Jari Häkkinen
Replying to nicklas: > Just to clarify, this ticket is …
2:18 PM Ticket #1135 (Create plug-in for importing raw data to multiple raw bioassays in one go) created by Jari Häkkinen
The batch importers now support creation of items down to RawBioAssay …
2:13 PM Changeset [4567] by Nicklas Nordborg
Fixes #1113 and #1114: "Broadcast to currently active BASE users" and …
2:13 PM Tickets #1113,​1114 batch updated by Nicklas Nordborg
fixed: (In [4567]) Fixes #1113 and #1114: "Broadcast to currently active BASE …
2:10 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) updated by Nicklas Nordborg
Type changed
Just to clarify, this ticket is about the "Formula intensity …
1:50 PM Ticket #1134 (Raw bioassays are available for inclusion in root bioassay creation ...) created by Jari Häkkinen
Creating a new root bioassay from raw bioassays in some cases fail …
1:39 PM Ticket #1114 (Blocking of log in action) updated by Nicklas Nordborg
Owner, Status changed
11:45 AM Ticket #1113 (Broadcast to currently active BASE users) updated by Nicklas Nordborg
Status, Owner changed
11:37 AM Changeset [4566] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:37 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4566]) References #792: Add support for units to annotation …
11:19 AM Ticket #1133 (Experimental factors - inherit annotations) updated by Nicklas Nordborg
It is not trivial to automatically inherit annotations. There must be …
11:13 AM Ticket #1105 (Automatically set "array design" on raw bioassay that has link via ...) updated by Martin Svensson
Status, Owner changed
10:44 AM Ticket #1133 (Experimental factors - inherit annotations) created by base
I have in BASE2 created a new annotation at the Biosource level. When …
9:58 AM Changeset [4565] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
9:58 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4565]) References #792: Add support for units to annotation …
9:57 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) closed by Martin Svensson
fixed: (In [4564]) Fixes #1104 Automatically set "number of arrays" on …
9:57 AM Changeset [4564] by Martin Svensson
Fixes #1104 Automatically set "number of arrays" on hybridization that …
9:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
(In [4563]) References #1104, Updating the 'number of arrays'-field …
9:12 AM Changeset [4563] by Martin Svensson
References #1104, Updating the 'number of arrays'-field when an …

Oct 6, 2008:

2:10 PM Changeset [4562] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:10 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4562]) References #792: Add support for units to annotation …
11:18 AM Changeset [4561] by Nicklas Nordborg
References #792: Add support for units to annotation values Updated …
11:18 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4561]) References #792: Add support for units to annotation …
11:14 AM WikiStart edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:27 AM DeveloperInformation edited by Nicklas Nordborg
Removed links to trunk versions since there is no published trunk … (diff)
9:22 AM Changeset [4560] by Nicklas Nordborg
References #792: Add support for units to annotation values All list …
9:22 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4560]) References #792: Add support for units to annotation …
8:12 AM Ticket #1104 (Automatically set "number of arrays" on hybridization that has link to ...) updated by Martin Svensson
Owner, Status changed

Oct 3, 2008:

4:23 PM Changeset [4559] by Martin Svensson
Fixes #1092 Add listing of child items that are the same type as the parent
4:23 PM Ticket #1092 (Add listing of child items that are the same type as the parent) closed by Martin Svensson
fixed: (In [4559]) Fixes #1092 Add listing of child items that are the same …
2:26 PM Changeset [4558] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:26 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4558]) References #792: Add support for units to annotation …
12:28 PM Changeset [4557] by Nicklas Nordborg
References #792: Add support for units to annotation values Made …
12:28 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4557]) References #792: Add support for units to annotation …
10:56 AM Changeset [4556] by Nicklas Nordborg
References #792: Add support for units to annotation values …
10:56 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4556]) References #792: Add support for units to annotation …

Oct 2, 2008:

1:55 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4555]) References #792: Add support for units to annotation …
1:55 PM Changeset [4555] by Nicklas Nordborg
References #792: Add support for units to annotation values Made it …

Oct 1, 2008:

2:00 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) closed by Nicklas Nordborg
fixed: (In [4554]) Fixes #1131: Permission problems creating a new directory …
2:00 PM Changeset [4554] by Nicklas Nordborg
Fixes #1131: Permission problems creating a new directory in a shared …
1:01 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
The problem seems to be that the Directory.getNew() method fails if …
12:47 PM Changeset [4553] by Nicklas Nordborg
Fixes #1132: Plug-ins fail to create sub-directory when "auto-share" …
12:47 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) closed by Nicklas Nordborg
fixed: (In [4553]) Fixes #1132: Plug-ins fail to create sub-directory when …
12:09 PM Ticket #1132 (Plug-ins fail to create sub-directory when "auto-share" functionality ...) created by Nicklas Nordborg
Here is an example stacktrace from the ZipFileUnpacker plug-in. …
11:29 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Status, Owner changed

Sep 30, 2008:

2:14 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
Replying to jari: > ... (there are some other problems …
1:35 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Jari Häkkinen
The Base1PluginExecuter selects to store data in a directory based on …
12:03 PM Ticket #1131 (Permission problems creating a new directory in a shared directory) updated by Nicklas Nordborg
Hmmm... I really don't understand this bug report. It is up to the …
11:33 AM Ticket #1131 (Permission problems creating a new directory in a shared directory) created by Jari Häkkinen
On our BASE production server running 2.8.2 we have a problem running …

Sep 29, 2008:

11:41 AM Changeset [4552] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
11:41 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4552]) References #792: Add support for units to annotation …
9:49 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #1130: Batch importer may mix lookup for scanners …
9:48 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
Last commit [4550] was for ticket #1130!
9:47 AM Changeset [4551] by Nicklas Nordborg
Fixes #1127: Batch import: Problem importing labeled extracts - …
9:47 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #1127: Batch import: Problem importing labeled …
9:12 AM Changeset [4550] by Nicklas Nordborg
Fixes #1030: Batch importer may mix lookup for scanners and print robots
9:12 AM Ticket #1030 (Normaliztion: Median ratio for 1-channel data should support scaling ...) updated by Nicklas Nordborg
(In [4550]) Fixes #1030: Batch importer may mix lookup for scanners …
8:43 AM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) updated by Nicklas Nordborg
Status, Owner changed
8:42 AM Ticket #1130 (Batch importer looks may mix lookup for scanners and print robots) created by Nicklas Nordborg
The same template query is used for both scanners and print robots. …

Sep 26, 2008:

2:52 PM Changeset [4549] by Nicklas Nordborg
References #792: Add support for units to annotation values Added …
2:52 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4549]) References #792: Add support for units to annotation …
2:29 PM Changeset [4548] by Nicklas Nordborg
References #792: Add support for units to annotation values …
2:29 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4548]) References #792: Add support for units to annotation …
11:41 AM Ticket #1128 (Export of child items) updated by Jari Häkkinen
Maybe we should create a special export that allows inclusion of child …
11:41 AM Ticket #1129 (Filtering of child/parent items in table listing) created by Jari Häkkinen
In many cases it would be nice to be able to filter on child or parent …
11:03 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4547]) References #792: Add support for units to annotation …
11:03 AM Changeset [4547] by Nicklas Nordborg
References #792: Add support for units to annotation values * Added …

Sep 25, 2008:

6:35 PM Ticket #1128 (Export of child items) updated by Nicklas Nordborg
The table exporter plug-in only supports exporting "simple" …
6:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) updated by Nicklas Nordborg
Type, Milestone changed
The description seems correct. The importer doesn't filter on protocol …
5:28 PM DocBookSupport edited by Jari Häkkinen
Added link to on-line version of the sample sheet. (diff)
5:23 PM Ticket #1128 (Export of child items) created by base
Export of items does not allow selection of child items. I think that …
5:16 PM Ticket #1127 (Batch import: Problem importing labeled extracts - Duplicate protocol) created by base
I tried to import labeled extracts with a protocol connected (protocol …
2:35 PM Changeset [4546] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
2:35 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4546]) References #792: Add support for units to annotation …
2:13 PM Changeset [4545] by Nicklas Nordborg
References #792: Add support for units to annotation values * Change …
2:13 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4545]) References #792: Add support for units to annotation …
9:01 AM Changeset [4544] by Nicklas Nordborg
References #792: Add support for units to annotation values * Made …
9:01 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4544]) References #792: Add support for units to annotation …

Sep 24, 2008:

11:11 AM Features edited by Jari Häkkinen
Changed info on migration from BASE 1.2 to latest BASE. (diff)

Sep 22, 2008:

2:43 PM Changeset [4543] by Nicklas Nordborg
References #792: Add support for units to annotation values Added web …
2:43 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4543]) References #792: Add support for units to annotation …
9:19 AM Changeset [4542] by Nicklas Nordborg
References #792: Add support for units to annotation values Add …
9:19 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4542]) References #792: Add support for units to annotation …
8:50 AM Changeset [4541] by Nicklas Nordborg
References #792: Add support for units to annotation values Major …
8:50 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4541]) References #792: Add support for units to annotation …

Sep 21, 2008:

4:03 PM reporter_map_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:02 PM reporter_importer_genepix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix2.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_affymetrix.xml attached to DocBookSupport by Jari Häkkinen
4:01 PM reporter_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM reporter_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy5_cy3.xml attached to DocBookSupport by Jari Häkkinen
4:00 PM raw_data_importer_genepix-cy3_cy5.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_384wells.xml attached to DocBookSupport by Jari Häkkinen
3:59 PM plate_importer_96wells.xml attached to DocBookSupport by Jari Häkkinen

Sep 19, 2008:

10:27 AM Ticket #903 (Experiment Explorer is slow) updated by Jari Häkkinen
After my move to a more BASE user based position I begin to understand …
7:51 AM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) closed by Nicklas Nordborg
duplicate: Part of #425.
7:50 AM Changeset [4540] by Nicklas Nordborg
References #425, #1126. Now sets character set correctly when file upload.
7:50 AM Tickets #425,​1126 batch updated by Nicklas Nordborg
(In [4540]) References #425, #1126. Now sets character set correctly …

Sep 18, 2008:

5:16 PM Changeset [4539] by Martin Svensson
References #1092 Two of three biomaterials are updated and …
5:16 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
(In [4539]) References #1092 Two of three biomaterials are updated and …
4:16 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Jari Häkkinen
Of course. Some more details. After the upload clicking on Edit shows …
3:37 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) updated by Nicklas Nordborg
Stacktrace?
3:10 PM Ticket #1126 (Illegal charset exception when I try to import new BASE1 configuration) created by Jari Häkkinen
During upload of the configuration I do not select a charset ... …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Description changed
1:42 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
(In [4538]) References #792: Add support for units to annotation …
1:42 PM Changeset [4538] by Nicklas Nordborg
References #792: Add support for units to annotation values First …
11:31 AM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
Status, Owner changed
11:23 AM Changeset [4537] by Nicklas Nordborg
Merged patch release 2.8.2 to the trunk
11:08 AM Milestone BASE 2.8.2 completed
Revision Log: log:branches/2.8-stable@4500:4535
11:07 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed
11:07 AM DownloadPage edited by Nicklas Nordborg
Releasing 2.8.2 (diff)
11:03 AM Changeset [4536] by Nicklas Nordborg
Changes for future release 2.8.3
10:42 AM Changeset [4535] by Nicklas Nordborg
Tagging version 2.8.2
9:00 AM Changeset [4534] by Nicklas Nordborg
Preparing release 2.8.2
8:55 AM Ticket #1125 (Replace existing file in file upload) created by Nicklas Nordborg
Add option to allow replacing an existing file in "Upload new file" dialog.
8:44 AM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4533]) Fixes #1112: Create new items with project default …
8:44 AM Changeset [4533] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …

Sep 17, 2008:

2:48 PM Ticket #1092 (Add listing of child items that are the same type as the parent) updated by Martin Svensson
Status, Owner changed
2:36 PM Changeset [4532] by Nicklas Nordborg
Reverting changes from [4529] to avoid conflicts when merging 2.8.2 …
2:27 PM Changeset [4531] by Nicklas Nordborg
References #1124: Base1PluginExecuter fails to import lines with empty …
2:27 PM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
(In [4531]) References #1124: Base1PluginExecuter fails to import …
12:51 PM Ticket #1110 (Update documentation links on Wiki and in docbook-text) closed by Martin Svensson
fixed: The links on the wiki pages will be updated as soon as 2.8.2 is released.
12:48 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") closed by Martin Svensson
fixed
12:38 PM Ticket #1118 (Change problematic forms to use POST instead of GET) closed by Nicklas Nordborg
fixed: Closing this so we can release 2.8.2. Open a new ticket if more forms …
12:36 PM Ticket #1118 (Change problematic forms to use POST instead of GET) updated by Nicklas Nordborg
(In [4506]) References #1118: Change problematic forms to use POST …
12:36 PM Ticket #118 (Not allowed to change password) updated by Nicklas Nordborg
Previous commit belongs to ticket #1118.
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Status changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Nicklas Nordborg
Status, Owner changed
9:28 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) reopened by Nicklas Nordborg
There is also a similar problem with extra values being skipped if …
9:22 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) closed by Nicklas Nordborg
fixed: (In [4530]) Fixes #1124: Base1PluginExecuter fails to import lines …
9:22 AM Changeset [4530] by Nicklas Nordborg
Fixes #1124: Base1PluginExecuter fails to import lines with empty fields
8:58 AM Changeset [4529] by Jari Häkkinen
Addresses #1124. The index counter was not updated properly for number …
8:58 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
(In [4529]) Addresses #1124. The index counter was not updated …
8:52 AM Ticket #1112 (Create new items with project default properties from active project) reopened by Nicklas Nordborg
See #1123.
8:52 AM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) closed by Nicklas Nordborg
invalid: Seems like a side-effect of a bad implementation of #1112.
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) updated by Jari Häkkinen
Status changed
8:38 AM Ticket #1124 (Base1PluginExecuter fails to import lines with empty fields) created by Jari Häkkinen
I have problems importing BASEFiles that are a mix of serial and …

Sep 16, 2008:

11:31 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Raw data importer and Formula intensity calculator have the same issue.
8:06 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) updated by Jari Häkkinen
Description changed
The same is true for Base1PluginExecuter. Has something changed in …
7:42 PM Ticket #1123 (BioAssaySetExporter should request 'r' for reading Projects) created by Jari Häkkinen
I am running rev 4527 on trunk. Setting use permission to yes will …
4:29 PM Changeset [4528] by Martin Svensson
References #1111 Changed two misleading tooltips. Could not find any …
4:29 PM Ticket #1111 (Samples list page "new extract" (+) button popup says "new sample") updated by Martin Svensson
(In [4528]) References #1111 Changed two misleading tooltips. Could …
1:46 PM Ticket #792 (Add support for units to annotation values) updated by Nicklas Nordborg
SI units reference: http://physics.nist.gov/cuu/Units/units.html
12:58 PM Changeset [4527] by Nicklas Nordborg
Fixes #1112: Create new items with project default properties from …
12:58 PM Ticket #1112 (Create new items with project default properties from active project) closed by Nicklas Nordborg
fixed: (In [4527]) Fixes #1112: Create new items with project default …
9:25 AM Ticket #1112 (Create new items with project default properties from active project) updated by Nicklas Nordborg
Status, Owner changed
8:41 AM Ticket #425 (Store the character encoding for text files) closed by Nicklas Nordborg
fixed
8:39 AM Changeset [4526] by Nicklas Nordborg
References #425: Store the character encoding for text files Updated …
8:39 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4526]) References #425: Store the character encoding for text …
8:31 AM Changeset [4525] by Nicklas Nordborg
References #425: Store the character encoding for text files Adding …
8:31 AM Ticket #425 (Store the character encoding for text files) updated by Nicklas Nordborg
(In [4525]) References #425: Store the character encoding for text …
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