Timeline


and

Apr 23, 2008:

3:04 PM Changeset [4244] by nicklas
Fixes #993: Paste multiple barcodes in the Multiple slides wizard
3:04 PM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) closed by nicklas
fixed: (In [4244]) Fixes #993: Paste multiple barcodes in the Multiple slides …
1:51 PM Changeset [4243] by nicklas
Fixes #920: Add support for aborting queries using a StatlessSession?
1:51 PM Ticket #920 (Add support for aborting queries using a StatlessSession) closed by nicklas
fixed: (In [4243]) Fixes #920: Add support for aborting queries using a …
1:50 PM Ticket #1001 (Plug-ins that use the 'execute immediately' option can't be aborted) created by nicklas
This is true for all plug-ins even those that implements the …
1:44 PM Changeset [4242] by nicklas
Fixes #1000: SimpleExport? count items twice
1:44 PM Ticket #1000 (SimpleExport count items twice) closed by nicklas
fixed: (In [4242]) Fixes #1000: SimpleExport? count items twice
1:40 PM Ticket #1000 (SimpleExport count items twice) created by nicklas
The SimpleExport is the plug-in that is used for all table-like …

Apr 22, 2008:

2:07 PM Changeset [4241] by nicklas
Fixes #994: Create GAL export plug-in for array designs
2:07 PM Ticket #994 (Create GAL export plug-in for array designs) closed by nicklas
fixed: (In [4241]) Fixes #994: Create GAL export plug-in for array designs
2:06 PM Changeset [4240] by nicklas
Fixes #999: PrintMapImporter? should import feature diameter from TAM …
2:06 PM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) closed by nicklas
fixed: (In [4240]) Fixes #999: PrintMapImporter? should import feature …
11:48 AM Changeset [4239] by nicklas
References #994: Create GAL export plug-in for array designs Added …
11:36 AM Ticket #999 (PrintMapImporter should import feature diameter from TAM and MWBR files) created by nicklas
We need a new column in the ArrayDesignBlock table for this. The …

Apr 21, 2008:

10:50 AM Ticket #989 (Add support for using extension classes in custom JSP pages) closed by nicklas
fixed
10:50 AM Ticket #988 (Add support for servlets in extensions) closed by nicklas
fixed
10:49 AM Ticket #436 (Create extension system for the web application) closed by nicklas
fixed
10:00 AM Changeset [4238] by nicklas
Fixes #998: Decimal numbers may be incorrectly rounded
10:00 AM Ticket #998 (Decimal numbers may be incorrectly rounded) closed by nicklas
fixed: (In [4238]) Fixes #998: Decimal numbers may be incorrectly rounded

Apr 19, 2008:

3:26 PM Ticket #998 (Decimal numbers may be incorrectly rounded) created by johan
Numbers are not sorted correctly. Bioassay, Spots data, Sort Ch1. …

Apr 18, 2008:

2:41 PM Ticket #997 (Read and update installation/upgrade instructions) created by nicklas
The installation and upgrade instructions are becoming a bit old. We …
2:08 PM Changeset [4237] by nicklas
References #436: Create extension system for the web application …
1:06 PM Changeset [4236] by nicklas
References #436: Create extension system for the web application …
11:51 AM Changeset [4235] by nicklas
Fixes #996: MEV can't open data files that has a missing value in the …
11:51 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) closed by nicklas
fixed: (In [4235]) Fixes #996: MEV can't open data files that has a missing …
11:31 AM Ticket #932 (Convert the MeV launcher to an extension) closed by nicklas
fixed: (In [4234]) Fixes #932: Convert the MeV launcher to an extension …
11:31 AM Changeset [4234] by nicklas
Fixes #932: Convert the MeV launcher to an extension MEV-related code …
11:16 AM Ticket #996 (MEV can't open data files that has a missing value in the last column) created by nicklas
The BioAssaySetExporter? can export data in MEV format. The export …

Apr 17, 2008:

3:05 PM Changeset [4233] by nicklas
References #436: Create extension system for the web application …
2:25 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) closed by nicklas
fixed
2:25 PM DownloadPage edited by nicklas
Fixes #995 (diff)
2:06 PM Changeset [4232] by nicklas
Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
1:53 PM Ticket #995 (Add link to closed tickets for each milestone on DownloadPage) created by nicklas
It is a bit difficult to get to know what has been fixed for each …
1:38 PM Milestone BASE 2.6.2 completed
Bug fixes for 2.6.1. Revision log: log:branches/2.6-stable@4191:4230
1:37 PM DownloadPage edited by nicklas
Releasing 2.6.2 (diff)
1:31 PM Changeset [4231] by nicklas
Changes for future release 2.6.3
1:19 PM Changeset [4230] by nicklas
Tagging version 2.6.2
1:19 PM Changeset [4229] by nicklas
Preparing release 2.6.2
1:18 PM Changeset [4228] by nicklas
References #957: Base1PluginExecuter doesn't import plug-in generated …
12:30 PM Tickets #990,​991 batch updated by nicklas
fixed: (In [4227]) Fixes #990 and #991: Change default create date... and …
12:30 PM Changeset [4227] by nicklas
Fixes #990 and #991: Change default create date... and Created date - …
12:17 PM Changeset [4226] by nicklas
Fixes #961: Expand the maximum number of characters accepted by filter …
12:17 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) closed by nicklas
fixed: (In [4226]) Fixes #961: Expand the maximum number of characters …

Apr 16, 2008:

8:15 AM Changeset [4225] by nicklas
References #989: Add support for using extension classes in custom JSP …
8:02 AM Changeset [4224] by nicklas
References #436: Create extension system for the web application Svn …

Apr 15, 2008:

10:09 PM Ticket #927 (Image Macro fails on Feature Trac Page) closed by johan
fixed
10:06 PM bioassayset_plot.jpg attached to Features by johan
9:59 PM Features edited by johan
(diff)
9:58 PM experiment_overview.jpg attached to Features by johan
9:50 PM bioassayset_histplot.jpg attached to Features by johan
9:47 PM experiment_explorer.jpg attached to Features by johan
8:14 PM Changeset [4223] by nicklas
References #989: Add support for using extension classes in custom JSP …
2:24 PM Changeset [4222] by nicklas
References #989: Add support for using extension classes in custom JSP …
12:59 PM dynamic_columns.jpg attached to Features by johan
12:18 PM Ticket #994 (Create GAL export plug-in for array designs) created by johan
Add functionality to create/download GAL files from array designs …
10:05 AM Ticket #993 (Paste multiple barcodes in the Multiple slides wizard) created by johan
In BASE2, multiple array slides can be created using the “Multiple …

Apr 14, 2008:

7:29 PM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) closed by nicklas
fixed: I am closing this now so we can release 2.6.2. New or remaining bugs …
7:13 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) closed by nicklas
wontfix: This can't be fixed. A column mapping ends as soon as a \ is …
5:34 PM Ticket #992 (Regular expressions with backslashes trigger "Not allowed to use ...) created by base
I have some raw data files with column headings F635 Median and …
2:40 PM Changeset [4221] by nicklas
References #988: Add support for servlets in extensions The main …
7:53 AM Ticket #955 (Array slides – make test for barcode uniqueness) closed by nicklas
fixed: (In [4220]) Fixes #955: Array slides ?\226?\128?\147 make test for …
7:53 AM Changeset [4220] by nicklas
Fixes #955: Array slides – make test for barcode uniqueness

Apr 11, 2008:

5:36 PM Ticket #991 (Created date - auto changed from blank when edit sample) created by johan
When editing a sample that does not have Creation date defined …
5:32 PM Ticket #990 (Change default create date for samples (and other items).) created by johan
When adding Samples the Created date is by default set to current …
1:57 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) closed by nicklas
fixed
1:54 PM Changeset [4219] by nicklas
References #986: Move example code for web services to the BASE …
11:49 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) closed by nicklas
fixed
11:46 AM DeveloperInformation edited by nicklas
Changed documentation links (diff)
11:41 AM DeveloperInformation edited by nicklas
Link to new site for examples (diff)
10:58 AM Changeset [4218] by nicklas
References #898: Move example code for plug-ins to the BASE plug-ins …

Apr 10, 2008:

9:47 PM Ticket #989 (Add support for using extension classes in custom JSP pages) created by nicklas
An extensions that uses custom JSP pages are currently limited to use …
9:31 PM Ticket #988 (Add support for servlets in extensions) created by nicklas
This is "needed" by the MeV launcher. It currently uses the MevExport?
6:07 PM Ticket #987 (NullPointerException in "Test with file" function if no "data header ...) created by johan
When using Annotation importer. Input file is small and contains two …
2:34 PM Ticket #986 (Move example code for web services to the BASE plug-ins site) created by nicklas
Was part of #898. Better to have this as it's own ticket.
2:28 PM Changeset [4217] by nicklas
References #436: Create extension system for the web application …
2:23 PM Changeset [4216] by nicklas
Fixes #985: File sizes are not correctly rounded Also fixed so that …
2:23 PM Ticket #985 (File sizes are not correctly rounded) closed by nicklas
fixed: (In [4216]) Fixes #985: File sizes are not correctly rounded Also …
1:58 PM Ticket #985 (File sizes are not correctly rounded) created by nicklas
I uploaded a file which size is 4050 (~3.995Kb) bytes in size. This is …
1:52 PM Changeset [4215] by nicklas
Fixes #984: Bioassays may show up duplicated in list of bioassays The …
1:52 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) closed by nicklas
fixed: (In [4215]) Fixes #984: Bioassays may show up duplicated in list of …
1:45 PM Ticket #983 (update.sh script doesn't validate parameters) closed by nicklas
fixed: (In [4214]) Fixes #983: update.sh script doesn't validate parameters
1:45 PM Changeset [4214] by nicklas
Fixes #983: update.sh script doesn't validate parameters
1:42 PM Changeset [4213] by nicklas
Fixes #980: Items created by jobs are not shared to the active project.
1:42 PM Ticket #980 (Items created by jobs are not shared to the active project.) closed by nicklas
fixed: (In [4213]) Fixes #980: Items created by jobs are not shared to the …
12:53 PM Changeset [4212] by nicklas
References #957: Base1PluginExecuter doesn't import plug-in generated …
12:18 PM Ticket #984 (Bioassays may show up duplicated in list of bioassays) created by nicklas
I am not really sure why this is happening. Sometimes a bioassay …
12:09 PM Ticket #983 (update.sh script doesn't validate parameters) created by jari
I am following the Illumina plug-in installation recipe and read that …

Apr 9, 2008:

4:08 PM Ticket #982 (Wrong destination (for shared to user) from link to directory from ...) created by johan
After running a plugin (that creates directories and files and …
3:16 PM Ticket #981 (Share all subdirectories and files when sharing a directory) created by johan
When sharing a directory, its subdirectories and files are not shared. …
3:15 PM Ticket #980 (Items created by jobs are not shared to the active project.) created by johan
The user case: When working in an active project I run a plugin in an …
2:44 PM Ticket #979 (Biomaterial LIMS) created by johan
Enhancing biomaterial management in BASE by adding Biomaterial LIMS …

Apr 8, 2008:

2:16 PM Ticket #978 (Unzipped files never inherit file type specified during upload) created by base
There should perhaps be an option to unpack an uploaded zip file …

Apr 7, 2008:

2:02 PM Changeset [4211] by nicklas
Fixes #970: PluginConfigurationImporter? doesn't support multi-valued …
2:02 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) closed by nicklas
fixed: (In [4211]) Fixes #970: PluginConfigurationImporter? doesn't support …
1:48 PM Changeset [4210] by nicklas
Fixes #977: ClassCastException? in Experiment overview when clicking on …
1:48 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) closed by nicklas
fixed: (In [4210]) Fixes #977: ClassCastException? in Experiment overview when …
1:24 PM Ticket #977 (ClassCastException in Experiment overview when clicking on an ...) created by nicklas
1. Select an experiment which has at least one experimental factor. …
1:19 PM Changeset [4209] by nicklas
Fixes #976: NullPointerException? in Experiment overview
1:19 PM Ticket #976 (NullPointerException in Experiment overview) closed by nicklas
fixed: (In [4209]) Fixes #976: NullPointerException? in Experiment overview
1:01 PM Changeset [4208] by nicklas
References #436: Create extension system for the web application …
12:19 PM Ticket #976 (NullPointerException in Experiment overview) created by nicklas
The original report is found in #975. I have now been able to …

Apr 4, 2008:

6:36 PM Ticket #975 (Experimental overview – error/erroneous warning – Duplicate sub-array index) created by johan
Working in an experiment containing 3 raw bioassays, all from the same …
2:44 PM Changeset [4207] by nicklas
References #436: Create extension system for the web application …
8:42 AM Changeset [4206] by nicklas
References #436: Create extension system for the web application …

Apr 3, 2008:

11:34 AM Ticket #974 (Link from raw bioassay to job that imported the raw data) created by johan
This ticket relates to ticket:750 A user scenario involves going back …

Apr 2, 2008:

8:41 PM Ticket #973 (Add a 'svn.update' target to the build file) closed by nicklas
fixed: (In [4205]) Fixes #973: Add a 'svn.update' target to the build file
8:41 PM Changeset [4205] by nicklas
Fixes #973: Add a 'svn.update' target to the build file
7:54 PM Ticket #973 (Add a 'svn.update' target to the build file) created by nicklas
This would simplify automatic generation of the documentation. After …
5:06 PM Ticket #972 (Assign job to experiment when the job is created) created by johan
This ticket concerns jobs running in experiments. Typically, a user …
1:46 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) closed by nicklas
invalid: This is problem with Tomcat.
1:20 PM Ticket #971 (Be able to upgrade BASE without restarting Tomcat) created by base
I just upgraded our dev server (system info below) […] and found …
12:43 PM Ticket #970 (PluginConfigurationImporter doesn't support multi-valued parameters) created by nicklas
From the mailing list: …
10:44 AM Changeset [4204] by nicklas
Fixes #969: Annotation importer doesn't save "Owned by ..." parameter …
10:44 AM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) closed by nicklas
fixed: (In [4204]) Fixes #969: Annotation importer doesn't save "Owned by …
9:43 AM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) closed by nicklas
fixed: (In [4203]) Fixes #963: New hybridization... button on labelled …
9:43 AM Changeset [4203] by nicklas
Fixes #963: New hybridization... button on labelled extract page …

Apr 1, 2008:

7:24 PM Ticket #969 (Annotation importer doesn't save "Owned by ..." parameter values) created by nicklas
It seems like the annotation importer doesn't save which option has …
3:30 PM Ticket #968 (Raw data importer – Enhance feature mismatch error handling) created by johan
Feature mismatch error handling when importing raw data concerns how …
3:18 PM Ticket #967 (Assign the parent directory permissions to new files/directories) created by base
I made a /home/shared folder and gave it Everyone RU permissions. The …
2:55 PM Changeset [4202] by nicklas
References #436: Create extension system for the web application All …
2:43 PM Ticket #966 (Registered and possibly last updated – add to all/most items) created by johan
Some items, such as Samples, have a Registered property, i.e., the …
2:25 PM Ticket #965 (Filtering the list – selection list vs. input box for enumeration type ...) created by johan
This ticket is somewhat related to ticket:962 but more specifically …

Mar 31, 2008:

8:41 PM Ticket #964 (Support preset filter list with null/not null values) created by nicklas
Currently, when a preset filter uses a list of predefined values you …
2:58 PM Ticket #963 (New hybridization... button on labelled extract page doesn't work as ...) created by base
When clicking on the "New hybridization..." action button on a labeled …
12:44 PM Ticket #962 (Filtering the list – ”not equal to” operator for selection list options) created by johan
When filtering an item list some columns that can only take a few …
12:13 PM Ticket #961 (Expand the maximum number of characters accepted by filter input box) created by johan
If an item list contains many items you may need to use a filter to be …
10:48 AM Changeset [4201] by nicklas
Fixes #958: Document that the migration program is no longer actively …
10:48 AM Ticket #958 (Document that the migration program is no longer actively tested or ...) closed by nicklas
fixed: (In [4201]) Fixes #958: Document that the migration program is no …
10:00 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) closed by nicklas
fixed: (In [4200]) Fixes #960: Removing a user from a group doesn't work if …
10:00 AM Changeset [4200] by nicklas
Fixes #960: Removing a user from a group doesn't work if the user is a …
9:59 AM Ticket #959 (Users may be duplicated in group member list for quota groups) closed by nicklas
fixed: (In [4199]) Fixes #959: Users may be duplicated in group member list …
9:59 AM Changeset [4199] by nicklas
Fixes #959: Users may be duplicated in group member list for quota groups
9:58 AM Ticket #960 (Removing a user from a group doesn't work if the user is a quota group ...) created by nicklas
How to reproduce: 1. Create a group G and assign it some quota 2. …

Mar 28, 2008:

2:52 PM Ticket #959 (Users may be duplicated in group member list for quota groups) created by nicklas
How to reproduce: 1. Create two groups, A and B. Assign quota to one …
2:42 PM Ticket #958 (Document that the migration program is no longer actively tested or ...) created by nicklas
There is a section about the migration in the docbook documentation.
2:41 PM Changeset [4198] by nicklas
References #436: Create extension system for the web application …

Mar 27, 2008:

8:56 AM Ticket #957 (Base1PluginExecuter doesn't import plug-in generated BASEfiles as expected) created by nicklas
The first case was a filtering plug-in which caused the raw data links …
8:36 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) closed by nicklas
fixed: (In [4197]) Fixes #956: Spot image generation throws …
8:36 AM Changeset [4197] by nicklas
Fixes #956: Spot image generation throws NullPointerException? if a …
8:02 AM Ticket #956 (Spot image generation throws NullPointerException if a spot has an X ...) created by nicklas
Here is the stacktrace (from BASE 2.4.5): […] See also: …

Mar 26, 2008:

7:12 PM Ticket #955 (Array slides – make test for barcode uniqueness) created by nicklas
As mentioned in the BASE core specifications enforcing array slide …
6:16 PM Ticket #954 (Array slides – Creating array slides using import plugin) created by johan
In BASE2, array slides can be created one-by-one or by using the …

Mar 25, 2008:

10:01 AM Changeset [4196] by nicklas
Fixes #952: Update MySQL JDBC driver to a newer version
10:01 AM Ticket #952 (Update MySQL JDBC driver to a newer version) closed by nicklas
fixed: (In [4196]) Fixes #952: Update MySQL JDBC driver to a newer version
9:08 AM Changeset [4195] by nicklas
Merged patch release 2.6.1 to the trunk.
9:07 AM ReleaseProcedure edited by nicklas
Corrected merge instructions (diff)
9:02 AM ReleaseProcedure edited by nicklas
Updating release procedure (diff)
8:50 AM Milestone BASE 2.6.1 completed
Bug fixes for 2.6. Revision log: log:branches/2.6-stable@4156:4191
8:43 AM DownloadPage edited by nicklas
Added 2.6.1 for download (diff)
8:31 AM Changeset [4194] by nicklas
Changes for future release 2.6.2
8:28 AM Changeset [4193] by nicklas
Tagging version 2.6.1
8:10 AM Changeset [4192] by nicklas
Preparing release 2.6.1
Note: See TracTimeline for information about the timeline view.