Timeline


and

Feb 5, 2008:

12:24 PM Ticket #636 (Kill a running job) closed by nicklas
fixed: Reopen or create new tickets if there are problems or support for …
12:23 PM Changeset [4128] by nicklas
References #636: Kill a running job Support for interruption in some …
11:40 AM Ticket #893 (Add support for setting a job's status to ABORTING) closed by nicklas
fixed: (In [4127]) Fixes #893: Add support for setting a job's status to ABORTING
11:40 AM Changeset [4127] by nicklas
Fixes #893: Add support for setting a job's status to ABORTING
9:33 AM Ticket #892 (Abort long-running queries) closed by nicklas
fixed: DataQuery:s also has the potential of taking long time. This includes …
9:32 AM Ticket #920 (Add support for aborting queries using a StatlessSession) created by nicklas
Many of our performance-sensitive queries use a StatelessSession? since …
8:57 AM Ticket #919 (Long query against dynamic database may cause session to timeout) closed by nicklas
fixed: Fixed in [4126]
8:39 AM Changeset [4126] by nicklas
Fxies #919: Long query against dynamic database may cause session to …
8:06 AM Ticket #919 (Long query against dynamic database may cause session to timeout) created by nicklas
This is the same as #794, but is seems like it was never implemented …

Feb 4, 2008:

8:29 PM Changeset [4125] by nicklas
Fixes #918: Adding multiple new DataFileTypes? to a platform or variant …
8:29 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) closed by nicklas
fixed: (In [4125]) Fixes #918: Adding multiple new DataFileTypes? to a …
8:22 PM Ticket #918 (Adding multiple new DataFileTypes to a platform or variant only saves ...) created by nicklas
This happens in the Illumina installation plug-ins (see …
7:20 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) closed by nicklas
fixed: Now tested on windows.
2:36 PM Changeset [4124] by nicklas
Fixes #915: NullPointerException? when a raw data type is missing Use …
2:36 PM Ticket #915 (NullPointerException when a raw data type is missing) closed by nicklas
fixed: (In [4124]) Fixes #915: NullPointerException? when a raw data type is …
1:32 PM Changeset [4123] by nicklas
Fixes #917: The progress reporter for a job should update the database …
1:32 PM Ticket #917 (The progress reporter for a job should update the database if the ...) closed by nicklas
fixed: (In [4123]) Fixes #917: The progress reporter for a job should update …
1:26 PM Ticket #917 (The progress reporter for a job should update the database if the ...) created by nicklas
The current rule is that the progress is only updated if at least 5 …
1:14 PM Changeset [4122] by nicklas
References #913: Plug-in JAR paths should support paths relative to …
1:02 PM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) reopened by nicklas
Reopens this ticket because I think the implementation is not …
12:17 PM Changeset [4121] by nicklas
Fixes #916: Base1PluginExecuter commits transaction even in case of a …
12:17 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) closed by nicklas
fixed: (In [4121]) Fixes #916: Base1PluginExecuter commits transaction even …
12:09 PM Changeset [4120] by nicklas
References #636: Kill a running job All core plug-ins can now be …
12:01 PM Ticket #916 (Base1PluginExecuter commits transaction even in case of a failure) created by nicklas
If there is an error during the execution of a BASE 1 plug-in using …
10:00 AM Ticket #915 (NullPointerException when a raw data type is missing) created by nicklas
If a raw data type is removed from the raw-data-types.xml file and …

Feb 1, 2008:

4:31 PM Changeset [4119] by nicklas
References #892: Abort long-running queries Implemented a way to …
3:00 PM Changeset [4118] by nicklas
References #636: Kill a running job Implemented support for …
10:36 AM Changeset [4117] by nicklas
References #902: Support for multiple configuration files for raw data …

Jan 31, 2008:

4:39 PM Changeset [4116] by martin
Fixes #914 Make PluginConfigurationImporter? smarter
4:39 PM Ticket #914 (Make PluginConfigurationImporter smarter) closed by martin
fixed: (In [4116]) Fixes #914 Make PluginConfigurationImporter? smarter
1:55 PM Ticket #912 (Plugin auto-install can not perform import when not all ...) closed by martin
fixed: (In [4115]) Fixes #912 Plugin auto-install can not perform import when …
1:55 PM Changeset [4115] by martin
Fixes #912 Plugin auto-install can not perform import when not all …
1:34 PM Ticket #914 (Make PluginConfigurationImporter smarter) created by martin
As it is now the importer lists all configurations from an import …
11:27 AM Changeset [4114] by nicklas
References #913: Added some documentation
11:21 AM Changeset [4113] by nicklas
Fixes #913: Plug-in JAR paths should support paths relative to the …
11:21 AM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) closed by nicklas
fixed: (In [4113]) Fixes #913: Plug-in JAR paths should support paths …
10:44 AM Ticket #911 (Add support for having file validators and meta data extrators in ...) closed by nicklas
fixed: (In [4112]) Fixes #911: Add support for having file validators and …
10:44 AM Changeset [4112] by nicklas
Fixes #911: Add support for having file validators and meta data …
10:03 AM Ticket #913 (Plug-in JAR paths should support paths relative to the plugins.dir ...) created by nicklas
If the start of the plug-in JAR path matches the plugins.dir setting …
9:34 AM Ticket #912 (Plugin auto-install can not perform import when not all ...) created by martin
This is because the configuration importer doesn't fully support …
8:47 AM Ticket #911 (Add support for having file validators and meta data extrators in ...) created by nicklas
It should not be very difficult. Just add another field with the JAR …
8:37 AM Ticket #910 (Plug-ins ignore file set by the auto-detect file format function) closed by nicklas
fixed: (In [4111]) Fixes #910: Plug-ins ignore file set by the auto-detect …
8:37 AM Changeset [4111] by nicklas
Fixes #910: Plug-ins ignore file set by the auto-detect file format …

Jan 30, 2008:

1:44 PM Changeset [4110] by martin
References #894 Removed an unnecessary value check. The check has …
1:01 PM Changeset [4109] by martin
References #894 Allow 0 as a block number in BlockInfo?
12:12 PM Ticket #910 (Plug-ins ignore file set by the auto-detect file format function) created by nicklas
This happens in the ReporterMapImporter? and in the …
11:13 AM Changeset [4108] by nicklas
References #894: Support for array designs with other feature …

Jan 29, 2008:

2:52 PM Changeset [4107] by nicklas
References #909: Move some static fields from AbstractFlatFileImporter?
12:00 PM Ticket #909 (Move some static fields from AbstractFlatFileImporter to a separate class) created by nicklas
The AbstractFlatFileImporter? class contains parameter declarations …
9:05 AM Ticket #908 (Exception when listing features of an array design) closed by nicklas
fixed: (In [4106]) References #894. Fixes #908.
9:05 AM Changeset [4106] by nicklas
References #894. Fixes #908.

Jan 28, 2008:

2:14 PM Ticket #908 (Exception when listing features of an array design) created by martin
An exception is thrown when trying to view feature list page. …
1:52 PM Changeset [4105] by nicklas
Fixes #907: "Test with file" function should be able to wrap input stream
1:52 PM Ticket #907 ("Test with file" function should be able to wrap input stream) closed by nicklas
fixed: (In [4105]) Fixes #907: "Test with file" function should be able to …
1:29 PM Changeset [4104] by nicklas
Fixes #906: FlatFileParser? should not always throw an exception if a …
1:29 PM Ticket #906 (FlatFileParser should not always throw an exception if a column header ...) closed by nicklas
fixed: (In [4104]) Fixes #906: FlatFileParser? should not always throw an …
1:27 PM Ticket #907 ("Test with file" function should be able to wrap input stream) created by nicklas
The "Test with file" function currently only support plain text files. …
1:11 PM Changeset [4103] by martin
Typo
11:48 AM Ticket #906 (FlatFileParser should not always throw an exception if a column header ...) created by nicklas
Calling FlatFileParser?.getMapper() for a column that is not present in …
11:07 AM Changeset [4102] by nicklas
Fixes #905: AbstractFlatFileParser? aborts parsing if a parseHeaders() …
11:07 AM Ticket #905 (AbstractFlatFileParser aborts parsing if a parseHeaders() doesn't find ...) closed by nicklas
fixed: (In [4102]) Fixes #905: AbstractFlatFileParser? aborts parsing if a …
11:02 AM Changeset [4101] by nicklas
Fixes #904: Subclasses of AbstractFlatFileImporter? should be able to …
11:02 AM Ticket #904 (Subclasses of AbstractFlatFileImporter should be able to wrap the file ...) closed by nicklas
fixed: (In [4101]) Fixes #904: Subclasses of AbstractFlatFileImporter? should …
10:54 AM Ticket #905 (AbstractFlatFileParser aborts parsing if a parseHeaders() doesn't find ...) created by nicklas
This mainly affects multi-section file formats. The correct behavior …
8:10 AM Ticket #904 (Subclasses of AbstractFlatFileImporter should be able to wrap the file ...) created by nicklas
This would, for example, make it possible to use the …

Jan 25, 2008:

8:07 AM Changeset [4100] by nicklas
Fixes #888: Make dynamic table creation code more stable Removed …
8:07 AM Ticket #888 (Make dynamic table creation code more stable) closed by nicklas
fixed: (In [4100]) Fixes #888: Make dynamic table creation code more stable …

Jan 23, 2008:

4:37 PM Changeset [4099] by nicklas
References #888: Make dynamic table creation code more stable Now …
3:58 PM Ticket #903 (Experiment Explorer is slow) created by base
Here's some code which is pretty much identical to …
3:13 PM Changeset [4098] by nicklas
Fixes #887: Internal job queue may start the same job more than once …
3:13 PM Ticket #887 (Internal job queue may start the same job more than once if running ...) closed by nicklas
fixed: (In [4098]) Fixes #887: Internal job queue may start the same job more …
2:43 PM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) closed by nicklas
fixed: (In [4097]) Fixes #900: Verify that multiple raw data spots on the …
2:43 PM Changeset [4097] by nicklas
Fixes #900: Verify that multiple raw data spots on the same raw …

Jan 22, 2008:

2:22 PM Changeset [4096] by nicklas
Fixes #902: Support for multiple configuration files for raw data …
2:22 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) closed by nicklas
fixed: (In [4096]) Fixes #902: Support for multiple configuration files for …
12:15 PM Ticket #902 (Support for multiple configuration files for raw data types and ...) created by nicklas
The raw-data-types.xml and extended-properties.xml files are getting …
11:03 AM Ticket #877 (Illumina SNP validator and meta-data extractor) closed by martin
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/93
10:59 AM Ticket #875 (Create Illumina SNP raw data type) closed by martin
invalid: Moved to BASE plug-ins:http://baseplugins.thep.lu.se/ticket/92
10:45 AM Ticket #876 (Illumina plug-ins: Illumina expression raw data types comes from 2 sources) closed by nicklas
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/91
10:36 AM Ticket #874 (Plugin to create array designs from an Illumina bgx-file.) closed by nicklas
invalid: Moved to BASE plug-ins: http://baseplugins.thep.lu.se/ticket/90

Jan 21, 2008:

5:10 PM Changeset [4095] by enell
Merged patch release 2.5.1 to the trunk. Delta 2.5 - 2.5.1
1:07 PM Changeset [4094] by jari
Fixed typo.

Jan 19, 2008:

7:41 PM DownloadPage edited by jari
Corrected 2.5.1 release date. (diff)

Jan 18, 2008:

4:05 PM Changeset [4093] by enell
Reverted to revision r4089
2:36 PM Milestone BASE 2.5.1 completed
log:branches/2.5-stable@4048:4090
2:34 PM Changeset [4092] by enell
Merged from 2.5.1 Correct
2:21 PM Changeset [4091] by enell
Merged from 2.5.1
2:10 PM Changeset [4090] by enell
Merged patch release 2.5.1 to the trunk. Delta 2.5.1 - 2.5
1:43 PM Changeset [4089] by nicklas
Fixes #901: GuiContext? should implement the equals() method
1:43 PM Ticket #901 (GuiContext should implement the equals() method) closed by nicklas
fixed: (In [4089]) Fixes #901: GuiContext? should implement the equals() method
1:34 PM DownloadPage edited by enell
(diff)
1:26 PM Changeset [4088] by enell
Changes for future release 2.5.2
1:22 PM Ticket #901 (GuiContext should implement the equals() method) created by nicklas
It is hard to compare if two objects represents the same context otherwise.
12:52 PM Ticket #891 (Upgrade demo server to BASE 2.5) closed by enell
fixed
12:47 PM Changeset [4087] by enell
Tagging version 2.5.1
11:41 AM Changeset [4086] by enell
Preparing release 2.5.1

Jan 17, 2008:

12:08 PM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) closed by nicklas
fixed: (In [4085]) Fixes #899: Specify "source" and "target" options in …
12:08 PM Changeset [4085] by nicklas
Fixes #899: Specify "source" and "target" options in <javac> tasks in …
11:53 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) closed by nicklas
fixed: (In [4084]) Fixes #895: Add serialVersionUID to all classes that need …
11:53 AM Changeset [4084] by nicklas
Fixes #895: Add serialVersionUID to all classes that need it but …
11:08 AM Changeset [4083] by nicklas
References #894: Support for array designs with other feature …
9:42 AM Ticket #900 (Verify that multiple raw data spots on the same raw bioassay doesn't ...) created by nicklas
This should not be allowed and will lead to problems when analysing. I …
9:37 AM Ticket #899 (Specify "source" and "target" options in <javac> tasks in our ant buildfile) created by nicklas
The "source" specifies the java version of the source files. The …
9:27 AM Ticket #898 (Move example code for plug-ins to the BASE plug-ins site) created by nicklas
It is better to have them as external projects. This will also give us …

Jan 16, 2008:

9:49 PM ReleaseProcedure edited by jari
Added a note to upload the example code packages to download area. (diff)
9:43 PM Ticket #886 (Make sure that plug-in and web services examples can be downloaded ...) closed by jari
fixed
9:42 PM DeveloperInformation edited by jari
Fixes ticket::886 (diff)
9:26 PM Ticket #897 (Potential temporary directory clash for plugins running through job agents) created by jari
With modern multi-core machines there will probably be a desire to run …
7:55 PM WikiStart edited by jari
(diff)
12:01 PM Ticket #896 (Stop generating too long URL:s) created by nicklas
If a list page is configured to display many columns (around 50+), you …

Jan 15, 2008:

3:38 PM Changeset [4082] by nicklas
Fixes #879: Add column holding the filename of last file used for …
3:38 PM Ticket #879 (Add column holding the filename of last file used for updating ...) closed by nicklas
fixed: (In [4082]) Fixes #879: Add column holding the filename of last file …
3:00 PM Changeset [4081] by nicklas
References #636: Kill a running job Updated UML diagram
2:58 PM Changeset [4080] by nicklas
References #894: Support for array designs with other feature …
11:47 AM Ticket #895 (Add serialVersionUID to all classes that need it but doesn't have it) created by nicklas
The serialVersionUID field is recommended for all Serializable …
7:54 AM Ticket #879 (Add column holding the filename of last file used for updating ...) reopened by nicklas
Column declaration doesn't set max string length. No 'public static …

Jan 14, 2008:

3:01 PM Ticket #867 (Support for array designs without coordinate/position information for ...) closed by nicklas
wontfix
3:00 PM Ticket #894 (Support for array designs with other feature identification methods ...) created by nicklas
This ticket replaces #867. It had a slightly different angle, and the …
1:51 PM Changeset [4079] by nicklas
Fixes #890: Ant target 'package.examples' fails when compiling webservices
1:51 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) closed by nicklas
fixed: (In [4079]) Fixes #890: Ant target 'package.examples' fails when …
12:49 PM Ticket #893 (Add support for setting a job's status to ABORTING) created by nicklas
Plug-ins that supports aborting may not always respond immediately. …
12:46 PM Ticket #892 (Abort long-running queries) created by nicklas
A problem that became visible when working with #636 (Kill a running …
12:21 PM Changeset [4078] by nicklas
References #636: Kill a running job * Signals are now working with …

Jan 12, 2008:

12:10 AM Changeset [4077] by jari
Correcting typo.

Jan 11, 2008:

4:16 PM Ticket #879 (Add column holding the filename of last file used for updating ...) closed by martin
fixed: (In [4076]) Fixes #879 Add column holding the filename of last file …
4:16 PM Changeset [4076] by martin
Fixes #879 Add column holding the filename of last file used for …
2:27 PM Ticket #891 (Upgrade demo server to BASE 2.5) created by nicklas
And to 2.5.1 when it is released.
2:24 PM Ticket #890 (Ant target 'package.examples' fails when compiling webservices) created by nicklas
Compile BASE with: ant clean package.examples Part of the …

Jan 10, 2008:

4:44 PM Changeset [4075] by martin
References #879 The database has now been updated, including UML …

Jan 9, 2008:

10:11 PM Ticket #889 (Clicking "Help" throws a Python error) created by base
http://base2.thep.lu.se/demo/ BASE 2.5.0beta (build #3933; schema #45) …
9:30 AM Ticket #888 (Make dynamic table creation code more stable) created by nicklas
If the timing is unfortunate between two plug-in jobs, the may both …
9:14 AM Ticket #887 (Internal job queue may start the same job more than once if running ...) created by nicklas
There have been reports on the mailing list that although only a …

Jan 8, 2008:

1:06 PM Changeset [4074] by nicklas
References #636: Kill a running job Infrastructure is now in place. …
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