Timeline
Aug 16, 2007:
- 8:13 PM Changeset [3677] by
- Added copyright statement.
- 6:36 PM Changeset [3676] by
- Trying to fix illegal character problem.
- 4:47 PM WikiStart edited by
- Added link to svndigest output. (diff)
- 4:16 PM Changeset [3675] by
- Fixing copyright statements. Fixing svn properties.
- 2:52 PM ReleaseProcedure edited by
- (diff)
- 2:45 PM ReleaseProcedure edited by
- Packages moved to http://base2.thep.lu.se (diff)
- 2:42 PM Ticket #721 (Store data in files instead of in the database) updated by
-
Owner, Status changed
- 2:40 PM DownloadPage edited by
- Moved all downloadable packages to http://base2.thep.lu.se (diff)
- 11:43 AM Changeset [3674] by
- Added Dominic to .svndigest config.
- 11:27 AM Changeset [3673] by
- Updated .svndigest config.
- 11:21 AM ReleaseProcedure edited by
- svndigest information related fixes. (diff)
- 11:01 AM Changeset [3672] by
- Removed obsolete links and information.
- 10:07 AM Ticket #656 (Update release procedure) closed by
- fixed: (In [3671]) Fixes #656. New release procedures are added to …
- 10:07 AM Changeset [3671] by
- Fixes #656. New release procedures are added to wiki:ReleaseProcedure.
- 10:04 AM ReleaseProcedure edited by
- Working on ticket:656. This is the last draft before actually trying … (diff)
- 9:33 AM ReleaseProcedure edited by
- Working on ticket:656 (diff)
- 9:30 AM DownloadPage edited by
- Typo, changed svndigest to base. (diff)
- 9:21 AM ReleaseProcedure edited by
- Working on ticket:656 (diff)
- 9:02 AM DownloadPage edited by
- Restructurred the download page. (diff)
Aug 15, 2007:
- 12:37 PM ReleaseProcedure edited by
- Working on the release procedure. Refs ticket:656 (diff)
- 12:02 PM Changeset [3670] by
- Included numbers with scientific notation in the test.
- 11:50 AM Changeset [3669] by
- Removing obsolete file.
- 11:01 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) closed by
- fixed: (In [3668]) Fixes #724 Nullpointer exception when 'overwrite' is not …
- 11:01 AM Changeset [3668] by
- Fixes #724 Nullpointer exception when 'overwrite' is not set in …
- 10:57 AM Changeset [3667] by
- Display free memory before AND after System.gc().
- 10:52 AM ReleaseProcedure created by
- Creating release procedure page. This version is stolen from …
- 10:51 AM DeveloperInformation edited by
- Adding release procedures, refs ticket:656 (diff)
- 9:46 AM Ticket #337 (Tab2Mage export plugin) closed by
- fixed: This plugin is developed and distributed through …
- 9:43 AM Ticket #338 (Tab2Mage import plugin) closed by
- fixed: This plugin is developed and distributed through …
- 9:33 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) updated by
-
Status changed
- 9:31 AM Ticket #724 (Nullpointer exception when 'overwrite' is not set in export-plugin ...) created by
- This appear in the configuration process when no value has been …
Aug 14, 2007:
- 7:46 PM Ticket #469 (Improve error handling of invalid values in import plugins) updated by
- (In [3666]) References #469: Added negative numbers to test case with …
- 7:46 PM Changeset [3666] by
- References #469: Added negative numbers to test case with dirty data
- 4:55 PM WikiStart edited by
- Fixed sponsor links and images. (diff)
- 4:05 PM Ticket #723 (Update list with core plugins) closed by
- duplicate: This will be done when the core-plugin page is re-written into current …
- 2:53 PM Ticket #514 (Change permissions in Power User) closed by
- fixed: (In [3665]) Fixes #514 Change permissions in Power User
- 2:53 PM Changeset [3665] by
- Fixes #514 Change permissions in Power User
- 2:50 PM Changeset [3664] by
- Fixes #722: Create DynamicReporterQuery
- 2:50 PM Ticket #722 (Create DynamicReporterQuery) closed by
- fixed: (In [3664]) Fixes #722: Create DynamicReporterQuery
- 2:05 PM Ticket #723 (Update list with core plugins) created by
- The list with core plugins needs to be updated with configurations to …
- 12:47 PM Ticket #722 (Create DynamicReporterQuery) updated by
-
Owner, Status changed
- 12:47 PM Ticket #722 (Create DynamicReporterQuery) created by
- This will allow programs to load exactly the needed reporter …
- 12:01 PM Ticket #514 (Change permissions in Power User) updated by
-
Status changed
- 11:23 AM Ticket #514 (Change permissions in Power User) updated by
-
Type, Priority, Owner, Status changed
After deep consideration we have decided to remove the create and … - 9:25 AM Ticket #364 (Support for automatic install of non-core plugins) updated by
-
Milestone changed
- 9:21 AM Ticket #721 (Store data in files instead of in the database) created by
- As I see it there are four basic problems: 1. Make it possible to …
- 9:09 AM Changeset [3663] by
- Measure performance for reporter migration.
- 8:54 AM Changeset [3662] by
- Fixes #551 Read "Plugin developer" section
- 8:54 AM Ticket #551 (Read "Plugin developer" section) closed by
- fixed: (In [3662]) Fixes #551 Read "Plugin developer" section
- 8:16 AM Ticket #720 (Progress reporter when emptying trashcan) updated by
- (In [3661]) References #720: Progress reporter when emptying trashcan …
- 8:15 AM Changeset [3661] by
- References #720: Progress reporter when emptying trashcan Progress …
Aug 13, 2007:
- 1:25 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Owner, Status changed
- 1:09 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") closed by
- fixed: (In [3660]) Fixes #595 Read "Appendix: extended-properties.xml reference"
- 1:09 PM Changeset [3660] by
- Fixes #595 Read "Appendix: extended-properties.xml reference"
- 12:57 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Milestone changed
- 12:55 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
- (In [3659]) References #294: Performance testing Added framework for …
- 12:55 PM Changeset [3659] by
- References #294: Performance testing Added framework for testing BASE …
- 12:51 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by
-
Status, Owner changed
- 11:44 AM Changeset [3658] by
- Show stacktrace when a plug-in reports an error
- 11:26 AM Changeset [3657] by
- Migrate reporters first.
- 10:57 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) closed by
- wontfix
- 10:49 AM Ticket #523 (Write "Overview of BASE" section in Overview part) updated by
-
Milestone changed
- 10:49 AM Ticket #522 (Write "Why use BASE" section) updated by
-
Milestone changed
- 10:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) closed by
- wontfix: Plug-ins should check that it has proper credential before it starts …
- 8:03 AM Ticket #719 (Add support for JEP if() function) closed by
- fixed: (In [3656]) Fixes #719: Add support for JEP if() function
- 8:03 AM Changeset [3656] by
- Fixes #719: Add support for JEP if() function
Aug 10, 2007:
- 2:50 PM Ticket #719 (Add support for JEP if() function) updated by
-
Status, Owner changed
- 2:22 PM Ticket #720 (Progress reporter when emptying trashcan) closed by
- fixed: (In [3655]) Fixes #720: Progress reporter when emptying trashcan
- 2:22 PM Changeset [3655] by
- Fixes #720: Progress reporter when emptying trashcan
- 1:26 PM Changeset [3654] by
- Copying another missing file from trunk.
- 12:59 PM Changeset [3653] by
- Merged log:trunk#3581:3649 into the wwebservices branch.
- 12:53 PM Changeset [3652] by
- Adding missing files. These files exist in trunk but was not included …
- 12:17 PM Changeset [3651] by
- Fixed svn properties issues.
- 11:46 AM Changeset [3650] by
- Fixed performance problem with reporter migration. Added support for …
- 9:10 AM Changeset [3649] by
- Make sure list of formulas get loaded to avoid …
- 8:48 AM Ticket #720 (Progress reporter when emptying trashcan) updated by
-
Status, Owner changed
- 8:48 AM Ticket #720 (Progress reporter when emptying trashcan) created by
- Emptying the trashcan can take a very long time. Right now it is hard …
Aug 9, 2007:
- 4:31 PM Ticket #639 (exportPureMatrix method) updated by
-
Milestone changed
The interface of this method is not mature enough to be included in … - 4:28 PM Ticket #639 (exportPureMatrix method) updated by
- (In [3648]) refs #639 removing the exportPlainMatrix method.
- 4:28 PM Changeset [3648] by
- refs #639 removing the exportPlainMatrix method.
- 3:03 PM Ticket #719 (Add support for JEP if() function) created by
- JEP supports an if() function with the following syntax: …
- 11:11 AM Changeset [3647] by
- Fixes #718: BioAssaySet tries to calculate number of spots and …
- 11:11 AM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) closed by
- fixed: (In [3647]) Fixes #718: BioAssaySet tries to calculate number of spots …
- 9:47 AM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) updated by
-
Owner, Status changed
- 9:46 AM Ticket #451 (Zipped download) updated by
- (In [3646]) References #451: Zipped download Fixed test program and …
- 9:46 AM Changeset [3646] by
- References #451: Zipped download Fixed test program and added it to …
Aug 8, 2007:
- 7:43 PM Ticket #718 (BioAssaySet tries to calculate number of spots and reporter on ...) created by
- Stop with the following stack trace: […] The …
- 7:28 PM Ticket #639 (exportPureMatrix method) updated by
- (In [3645]) refs #639 stupid version of exportPureMatrix method that …
- 7:28 PM Changeset [3645] by
- refs #639 stupid version of exportPureMatrix method that simply …
- 2:52 PM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Owner, Status changed
I will start to create a BASE 2 test framework that can be used to: … - 2:45 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) closed by
- fixed: (In [3644]) Fixes #716: Plugin configuration import should be able ot …
- 2:45 PM Changeset [3644] by
- Fixes #716: Plugin configuration import should be able ot set the …
- 2:32 PM Changeset [3643] by
- Fixes #451: Zipped download Added user and plug-in developer documentation
- 2:32 PM Ticket #451 (Zipped download) closed by
- fixed: (In [3643]) Fixes #451: Zipped download Added user and plug-in …
- 1:42 PM Changeset [3642] by
- Fixes #715: Install should set same permission on plugin …
- 1:42 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) closed by
- fixed: (In [3642]) Fixes #715: Install should set same permission on plugin …
- 1:38 PM Ticket #717 (Make initdb, updatedb and other scripts accept a username) created by
- The current implementation forces the root user account to be named …
- 1:32 PM Ticket #451 (Zipped download) updated by
- (In [3641]) References #451: Zipped download Major redesign of the …
- 1:32 PM Changeset [3641] by
- References #451: Zipped download Major redesign of the packing …
- 12:59 PM Ticket #716 (Plugin configuration import should be able ot set the permission on ...) created by
- This should probably be an option in the wizard. See also ticket #715.
- 12:57 PM Ticket #715 (Install should set same permission on plugin configurations as on the ...) created by
Aug 7, 2007:
- 5:20 PM Changeset [3640] by
- a plugin can have no parameters
- 3:44 PM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) closed by
- fixed: (In [3639]) Fixes #714
- 3:44 PM Changeset [3639] by
- Fixes #714
- 1:40 PM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) updated by
-
Milestone, Owner, Status changed
- 12:49 PM Ticket #451 (Zipped download) updated by
-
Status changed
- 12:49 PM Ticket #451 (Zipped download) updated by
-
Owner, Status changed
- 12:09 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) closed by
- fixed
- 12:08 PM Ticket #698 (Fix Javadoc warnings) closed by
- fixed
- 12:07 PM Ticket #663 (TOC is to big) closed by
- wontfix
- 12:06 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) closed by
- wontfix
- 11:35 AM Ticket #714 (Base1PluginExecutor.JobParameter.toString() may generate incorrect XML) created by
- The Base1PluginExecutor.JobParameter.toString() method is used to …
- 11:30 AM Ticket #713 (Differences in the configuration file from base1) closed by
- fixed: (In [3638]) Fixes #713: Differences in the configuration file from base1
- 11:30 AM Changeset [3638] by
- Fixes #713: Differences in the configuration file from base1
- 11:17 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) closed by
- fixed: (In [3637]) Fixes #710: Allow subclasses to AbstractFlatFileParser to …
- 11:17 AM Changeset [3637] by
- Fixes #710: Allow subclasses to AbstractFlatFileParser to participate …
- 11:13 AM Ticket #486 (Import raw data from the Illumina platform) updated by
- (In [3636]) References #486: Added Jeremy Davis-Turak to credits.txt …
- 11:13 AM Changeset [3636] by
- References #486: Added Jeremy Davis-Turak to credits.txt for helping …
- 8:10 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) updated by
-
Status, Milestone, Owner changed
Aug 6, 2007:
- 2:49 PM Changeset [3635] by
- References #358: Better info from Migration tool Show log message …
- 2:49 PM Ticket #358 (Better info from Migration tool) updated by
- (In [3635]) References #358: Better info from Migration tool Show log …
- 2:48 PM Ticket #573 (Trim whitespace when checking for unique values) closed by
- fixed: (In [3634]) Fixes #573: Trim whitespace when checking for unique values
- 2:48 PM Changeset [3634] by
- Fixes #573: Trim whitespace when checking for unique values
- 12:35 PM Ticket #573 (Trim whitespace when checking for unique values) reopened by
- As it turns out, BASE 1 only removed trailing white spaces...not …
- 9:36 AM Ticket #574 (Handle database differences with case sensitivity) updated by
- (In [3633]) References #574. Test program didn't report error properly
- 9:36 AM Changeset [3633] by
- References #574. Test program didn't report error properly
Aug 3, 2007:
- 4:53 PM Ticket #713 (Differences in the configuration file from base1) reopened by
-
new Integer(options)exists in several other places in the … - 4:10 PM Changeset [3632] by
- Fixes #713
- 4:10 PM Ticket #713 (Differences in the configuration file from base1) closed by
- fixed: (In [3632]) Fixes #713
- 4:02 PM Ticket #713 (Differences in the configuration file from base1) created by
- The options value for the enumeration parameter can be empty. The …
- 3:09 PM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) closed by
- fixed: (In [3631]) Fixes #701: JarClassLoader should be able to auto-reload …
- 3:09 PM Changeset [3631] by
- Fixes #701: JarClassLoader should be able to auto-reload based on timestamp
- 2:32 PM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) updated by
-
Milestone, Owner, Status changed
- 2:02 PM Changeset [3630] by
- Fixes #704: Make sure DbControl is closed from www/common/import/index.jsp
- 2:02 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) closed by
- fixed: (In [3630]) Fixes #704: Make sure DbControl is closed from …
- 1:58 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) updated by
-
Owner, Status changed
- 1:53 PM Tickets #711,712 batch updated by
- fixed: (In [3629]) Fixes #712, References #711
- 1:53 PM Changeset [3629] by
- Fixes #712, References #711
- 1:51 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) updated by
- The good news is that the problem with the experiment beeing updated …
- 1:48 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) closed by
- duplicate: Duplicate of #712
- 1:47 PM Ticket #712 (DbControl.commit() may call onBeforeCommit() multiple times for the ...) created by
- See ticket #711 for a symptom of this defect. The …
- 1:09 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) updated by
-
Priority, Status, Owner changed
I have made some initial checks and the problem seems to be unrelated … - 12:07 PM Ticket #711 (Deleting a bioassayset doesn't decrease used quota as much as expected) created by
- 1. I started out with a new fresh experiment. It used 0 bytes. 2. A …
- 12:00 PM Changeset [3628] by
- References #625: PrintMapFlatFileImporter.isInContext now checks if …
- 12:00 PM Ticket #625 (Improve error/warning message display when selecting plug-ins) updated by
- (In [3628]) References #625: PrintMapFlatFileImporter.isInContext now …
- 11:49 AM Ticket #710 (Allow subclasses to AbstractFlatFileParser to participate in ...) created by
- This is currently an affair for the AbstractFlatFileParser only. The …
- 11:39 AM Ticket #709 (Install should install missing plug-in configurations when updating) updated by
- (In [3627]) References #709: Forgot to add predefined query
- 11:39 AM Changeset [3627] by
- References #709: Forgot to add predefined query
- 11:38 AM Ticket #486 (Import raw data from the Illumina platform) closed by
- fixed: (In [3626]) Fixes #486: Import raw data from the Illumina platform
- 11:38 AM Changeset [3626] by
- Fixes #486: Import raw data from the Illumina platform
- 11:24 AM Changeset [3625] by
- Fixes #709: Install should install missing plug-in configurations when …
- 11:24 AM Ticket #709 (Install should install missing plug-in configurations when updating) closed by
- fixed: (In [3625]) Fixes #709: Install should install missing plug-in …
- 10:58 AM Ticket #709 (Install should install missing plug-in configurations when updating) updated by
-
Status changed
- 10:58 AM Ticket #709 (Install should install missing plug-in configurations when updating) created by
- Currently, plug-in configurations are only installed if it is a new …
- 9:42 AM Changeset [3624] by
- Fixes #708: "NaN" and "Infinity" values in files causes SqlException
- 9:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) closed by
- fixed: (In [3624]) Fixes #708: "NaN" and "Infinity" values in files causes …
- 9:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by
-
Summary changed
- 9:06 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by
-
Status, Owner changed
- 9:06 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) updated by
- Doing it at the batcher level turned out to a bad idea. The reason is …
- 8:42 AM Ticket #708 ("NaN" and "Infinity" values in files causes SqlException) created by
- The string "NaN" when parsed by Java is seen as a valid numeric value …
- 7:44 AM Ticket #707 (Can't unlink items that have been put in the trashcan) updated by
-
Milestone, Summary, Description, Priority changed
Aug 2, 2007:
- 2:03 PM Ticket #707 (Can't unlink items that have been put in the trashcan) created by
- Items that have been marked for removal can't be unlinked with other …
- 12:37 PM Ticket #706 (Averagemethod on raw data types) updated by
- (In [3623]) References #706 Added average for genepix.flags
- 12:37 PM Changeset [3623] by
- References #706 Added average for genepix.flags
- 12:36 PM Tickets #700,590 batch updated by
- fixed: (In [3622]) Fixes #700, #590
- 12:36 PM Changeset [3622] by
- Fixes #700, #590
- 12:09 PM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by
- fixed: (In [3621]) Fixes #669
- 12:09 PM Changeset [3621] by
- Fixes #669
- 11:59 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) reopened by
- NullPointerException when creating a formula type that shouldn't have …
- 11:40 AM Ticket #706 (Averagemethod on raw data types) created by
- Go through the raw-data-types.xml and add appropriate average method …
- 9:00 AM Ticket #486 (Import raw data from the Illumina platform) updated by
- An example file from the Tab2Mage project …
- 8:41 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by
-
Description changed
- 8:40 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) closed by
- fixed: (In [3620]) Fixes #705: Add preset to "Test with file" for regular …
- 8:40 AM Changeset [3620] by
- Fixes #705: Add preset to "Test with file" for regular expression that …
- 8:28 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by
-
Description changed
- 8:23 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) updated by
-
Owner, Status changed
- 8:22 AM Ticket #705 (Add preset to "Test with file" for regular expression that can split a ...) created by
- This regexp seems to work: […] Thanks to Raimond Brookman …
Aug 1, 2007:
- 2:13 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) updated by
-
Description changed
- 2:13 PM Ticket #704 (Make sure DbControl is closed from www/common/import/index.jsp) created by
- The following stack trace appears in Tomcat log file: […]
- 1:36 PM Ticket #486 (Import raw data from the Illumina platform) updated by
-
Status changed
- 1:35 PM Changeset [3619] by
- Include test for selecting a parameter expression in SQL: SELECT …
- 1:19 PM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) closed by
- fixed: (In [3618]) Fixes #702: Add lineNum() function(s) to mapping …
- 1:19 PM Changeset [3618] by
- Fixes #702: Add lineNum() function(s) to mapping expressions supported …
- 12:06 PM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) updated by
-
Owner, Status changed
- 12:05 PM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) closed by
- fixed: (In [3617]) Fixes #703: Error message when loading invalid XML files …
- 12:05 PM Changeset [3617] by
- Fixes #703: Error message when loading invalid XML files doesn't …
- 11:00 AM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) updated by
-
Status, Owner changed
- 10:40 AM Ticket #703 (Error message when loading invalid XML files doesn't include the file name) created by
- For example: […]
- 10:06 AM Ticket #486 (Import raw data from the Illumina platform) updated by
- From Jeremy Davis-Turak: Here is a brief summary of what the data …
- 10:02 AM Ticket #486 (Import raw data from the Illumina platform) updated by
-
Description changed
- 10:02 AM Ticket #702 (Add lineNum() function(s) to mapping expressions supported by the ...) created by
- With this function we can import data and use the current line number …
- 9:53 AM Ticket #701 (JarClassLoader should be able to auto-reload based on timestamp) created by
- This would simplify plug-in development since you would only have to …
- 8:49 AM Ticket #698 (Fix Javadoc warnings) updated by
- (In [3616]) References #698: Fix Javadoc warnings Removed all …
- 8:49 AM Changeset [3616] by
- References #698: Fix Javadoc warnings Removed all existing warnings. …
Jul 31, 2007:
- 3:34 PM Ticket #700 (BioAssayExporter basefile: make it use merge on reporter) created by
- The exporter should be able to merge on reporter.
- 3:27 PM Ticket #698 (Fix Javadoc warnings) updated by
-
Status, Owner changed
- 2:45 PM Ticket #691 (Make LowessNormalization and MedianRatioNormalization extend ...) closed by
- fixed: (In [3615]) Fixes #691: Make LowessNormalization and …
- 2:45 PM Changeset [3615] by
- Fixes #691: Make LowessNormalization and MedianRatioNormalization …
- 2:14 PM Changeset [3614] by
- Fixes #699
- 2:14 PM Ticket #699 (BioAssayExporter basefile: Wrong number of columns) closed by
- fixed: (In [3614]) Fixes #699
- 2:05 PM Ticket #699 (BioAssayExporter basefile: Wrong number of columns) created by
- When exporting matrix not merged on reporter there is wrong number of …
- 1:56 PM Changeset [3613] by
- Fixes #673
- 1:56 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) closed by
- fixed: (In [3613]) Fixes #673
- 1:44 PM Ticket #691 (Make LowessNormalization and MedianRatioNormalization extend ...) updated by
-
Owner, Status changed
- 1:17 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) updated by
-
Status changed
- 12:57 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by
-
Owner, Status, Summary, Priority changed
- 12:57 PM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by
- (In [3612]) References #595: Write "Appendix: extended-properties.xml …
- 12:57 PM Changeset [3612] by
- References #595: Write "Appendix: extended-properties.xml reference" …
- 9:55 AM Ticket #595 (Read "Appendix: extended-properties.xml reference") updated by
-
Status, Owner changed
- 9:54 AM Ticket #191 (Mobile number field in user info?) updated by
- (In [3611]) References #191: Added callto: link to skype contact
- 9:54 AM Changeset [3611] by
- References #191: Added callto: link to skype contact
- 9:15 AM Ticket #486 (Import raw data from the Illumina platform) updated by
-
Description changed
- 9:07 AM DeveloperInformation edited by
- Example plug-ins download has changed location (diff)
- 9:03 AM Ticket #653 (Implement DbControl.flush() method) updated by
-
Milestone, Owner, Status changed
I had a go to implement this, but it turned out to be a lot more …
Jul 30, 2007:
- 7:42 AM Ticket #653 (Implement DbControl.flush() method) updated by
-
Status, Owner changed
Jul 27, 2007:
- 2:59 PM Ticket #360 (Make subsections on view pages hideable) updated by
- It is simple to include on a page with the help of a taglib. Example …
- 2:53 PM Ticket #360 (Make subsections on view pages hideable) updated by
- (In [3610]) References #360: Make subsections on view pages hideable …
- 2:53 PM Changeset [3610] by
- References #360: Make subsections on view pages hideable …
- 2:42 PM Ticket #551 (Read "Plugin developer" section) updated by
- (In [3609]) refs #551 - replaced it's with its where appropriate
- 2:42 PM Changeset [3609] by
- refs #551 - replaced it's with its where appropriate
- 11:41 AM Ticket #551 (Read "Plugin developer" section) updated by
-
Description changed
Updated link in description, since the old link went to some old … - 10:41 AM Changeset [3608] by
- Fixes #498: Move Array batches on Array design view page
- 10:41 AM Ticket #498 (Move Array batches on Array design view page) closed by
- fixed: (In [3608]) Fixes #498: Move Array batches on Array design view page
- 10:32 AM Ticket #498 (Move Array batches on Array design view page) updated by
-
Owner, Status changed
- 9:41 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
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Component changed
- 9:39 AM Ticket #551 (Read "Plugin developer" section) updated by
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Priority, Owner, Status, Summary changed
- 9:38 AM Ticket #551 (Read "Plugin developer" section) updated by
- (In [3607]) References #551: Write "Plugin developer" section Now …
- 9:38 AM Changeset [3607] by
- References #551: Write "Plugin developer" section Now ready for reading.
- 9:19 AM Ticket #698 (Fix Javadoc warnings) created by
- 8:36 AM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) updated by
- The problem seemed to affect zip files only. It was caused by the …
- 8:30 AM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) closed by
- fixed: (In [3606]) Fixes #697: Uploading and unpacking a compressed file …
- 8:30 AM Changeset [3606] by
- Fixes #697: Uploading and unpacking a compressed file corrupts the file
Jul 26, 2007:
- 5:44 PM Changeset [3605] by
- improved spelling
- 1:33 PM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) updated by
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Status, Owner changed
- 1:32 PM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) updated by
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Summary changed
- 1:32 PM Ticket #697 (Uploading and unpacking a compressed file corrupts the file) created by
- This is the scenario: * Upload a zip file to BASE * Choose to …
- 1:21 PM Ticket #257 (Fix the Jep.nodeToExpression method) closed by
- fixed: (In [3604]) Fixes #257: Fix the Jep.nodeToExpression method
- 1:21 PM Changeset [3604] by
- Fixes #257: Fix the Jep.nodeToExpression method
- 11:56 AM Changeset [3603] by
- Undo last commit which was done by accident.
- 11:52 AM Changeset [3602] by
Jul 25, 2007:
- 5:22 PM Ticket #451 (Zipped download) updated by
- 2) in the previous comment happens on Linux as well. I think maybe a …
- 5:09 PM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) updated by
- (In [3601]) References #692: Fixes possible NullPointerException in update
- 5:09 PM Changeset [3601] by
- References #692: Fixes possible NullPointerException in update
- 5:07 PM Ticket #451 (Zipped download) updated by
- I tested the plug-in when running BASE on Windows and it doesn't …
- 2:54 PM Ticket #257 (Fix the Jep.nodeToExpression method) updated by
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Status changed
- 1:14 PM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) closed by
- fixed: (In [3600]) Fixes #480: Verify values in extended-properties.xml and …
- 1:14 PM Changeset [3600] by
- Fixes #480: Verify values in extended-properties.xml and raw-data-types.xml
- 10:52 AM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) updated by
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Description changed
- 8:43 AM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) updated by
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Status, Description changed
- 8:26 AM Ticket #696 (Change icon for 'hidden filter' warning) closed by
- fixed: (In [3599]) Fixes #696: Change icon for 'hidden filter' warning
- 8:26 AM Changeset [3599] by
- Fixes #696: Change icon for 'hidden filter' warning
- 8:26 AM Ticket #696 (Change icon for 'hidden filter' warning) created by
- The current icon doesn't give much impression of a warning.
- 8:19 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) closed by
- fixed: (In [3598]) Fixes #566: Plugins using the flat file parser should warn …
- 8:19 AM Changeset [3598] by
- Fixes #566: Plugins using the flat file parser should warn about …
- 8:05 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) updated by
- The AnnotationFlatFileImporter doesn't check the column mappings as it …
- 7:57 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) updated by
-
Status changed
- 7:57 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) updated by
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Status changed
- 7:55 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- fixed: (In [3597]) Fixes #655: Plugins -> defintions fails with 'illegal …
- 7:55 AM Changeset [3597] by
- Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
- 3:08 AM Ticket #695 (implement run method in AbstractPlugin??) created by
- In …
Jul 24, 2007:
- 3:45 PM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
- I may be ignorant, but why is this wanted? Is this a request from user …
- 2:18 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
- In case there are existing presets which filters on the invalid filter …
- 2:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
-
Status changed
- 2:14 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
-
Owner, Status changed
- 2:14 PM Ticket #654 (Batch deletion of reporters) closed by
- fixed: (In [3596]) Fixes #654: Batch deletion of reporters
- 2:14 PM Changeset [3596] by
- Fixes #654: Batch deletion of reporters
- 1:17 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) updated by
-
Summary changed
- 1:11 PM Ticket #694 (Creating a new plate event generates an exception) closed by
- fixed: (In [3595]) Fixes #694: Creating a new plate event generates an exception
- 1:11 PM Changeset [3595] by
- Fixes #694: Creating a new plate event generates an exception
- 1:05 PM Ticket #694 (Creating a new plate event generates an exception) created by
- I've got a confusing error after I made a merge of plates. I actually …
- 1:01 PM MailingLists edited by
- Changed to Mail archive for basedb-devel list (diff)
- 11:45 AM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) reopened by
- The 'Complex column mapping' parameter is sneaking itself into the …
- 11:41 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) reopened by
- I can now get this error when: 1. I try to use an import plug-in and …
- 11:07 AM Ticket #654 (Batch deletion of reporters) updated by
-
Status, Owner changed
- 10:57 AM Changeset [3594] by
- Fixes #626: Remove base1executor any to any links
- 10:57 AM Ticket #626 (Remove base1executor any to any links) closed by
- fixed: (In [3594]) Fixes #626: Remove base1executor any to any links
- 10:56 AM MailingLists edited by
- Link to Mail Archive instead of SourceForge for basedb-users list archive (diff)
- 9:57 AM Ticket #626 (Remove base1executor any to any links) updated by
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Status, Owner changed
- 9:55 AM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) closed by
- fixed: (In [3593]) Fixes #692: Jobs that are part of an experiment should use …
- 9:55 AM Changeset [3593] by
- Fixes #692: Jobs that are part of an experiment should use permissions …
Jul 23, 2007:
- 3:01 PM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) updated by
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Owner, Status changed
- 2:57 PM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) closed by
- fixed: (In [3592]) Fixes #687: Make it possible for other plug-ins than the …
- 2:57 PM Changeset [3592] by
- Fixes #687: Make it possible for other plug-ins than the FormulaFilter …
- 2:29 PM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) updated by
-
Owner, Status changed
- 2:04 PM Changeset [3591] by
- References #551. Moved doc about secondary storage controllers from …
- 2:04 PM Ticket #551 (Read "Plugin developer" section) updated by
- (In [3591]) References #551. Moved doc about secondary storage …
- 1:37 PM Ticket #451 (Zipped download) updated by
- Using a hardcoded name ("temp.tar") for a temporarary file in …
- 1:32 PM Ticket #451 (Zipped download) updated by
- Here is the first stacktrace of the previous comment with line breaks: …
- 1:30 PM Ticket #451 (Zipped download) updated by
- Clearing the 'Save as' to use immediate download displays the …
- 1:24 PM Ticket #451 (Zipped download) updated by
- There is also a problem if a user hasn't delete permission or if a …
- 1:14 PM Ticket #451 (Zipped download) reopened by
- I have made some tests and there are some remaining issues: 1. If I …
- 12:43 PM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) closed by
- fixed: (In [3590]) Fixes #688: Don't use Float.valueOf() or …
- 12:43 PM Changeset [3590] by
- Fixes #688: Don't use Float.valueOf() or Float.parseString() to parse …
- 11:45 AM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) updated by
-
Owner, Status changed
- 11:44 AM Changeset [3589] by
- Fixes #693: Select import plug-in dialog should not display …
- 11:44 AM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) closed by
- fixed: (In [3589]) Fixes #693: Select import plug-in dialog should not …
- 11:37 AM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) updated by
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Owner, Status changed
- 11:37 AM Ticket #693 (Select import plug-in dialog should not display auto-detect option in ...) created by
- There are three requirements for this bug to be seen: 1. The plug-in …
- 11:28 AM Ticket #326 (Mass annotation plug-in) closed by
- fixed: (In [3588]) Fixes #326: Mass annotation plug-in
- 11:28 AM Changeset [3588] by
- Fixes #326: Mass annotation plug-in
Jul 22, 2007:
Jul 20, 2007:
- 6:50 PM Ticket #692 (Jobs that are part of an experiment should use permissions from that ...) created by
- In the current situation, only the user that created the job has …
- 3:45 PM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
- (In [3587]) References #686 Two more coreplugins are updated …
- 3:45 PM Changeset [3587] by
- References #686 Two more coreplugins are updated …
- 3:37 PM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
-
Description changed
- 3:36 PM Ticket #691 (Make LowessNormalization and MedianRatioNormalization extend ...) created by
- These plugins should extend AbstractAnalysisPlugin instead of …
- 2:40 PM Ticket #326 (Mass annotation plug-in) updated by
- (In [3586]) References #326: Mass annotation plug-in Major features …
- 2:40 PM Changeset [3586] by
- References #326: Mass annotation plug-in Major features in place. …
- 12:27 PM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) closed by
- fixed: (In [3585]) Fixes #685 The documentation is done
- 12:27 PM Changeset [3585] by
- Fixes #685 The documentation is done
- 12:09 PM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
- (In [3584]) References #686 Updated gui contexts in …
- 12:09 PM Changeset [3584] by
- References #686 Updated gui contexts in JepExtraValueCalculator to …
- 11:44 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
- (In [3583]) References #686 Jep Formula Filter and …
- 11:44 AM Changeset [3583] by
- References #686 Jep Formula Filter and JepExtraValueCalculator can now …
- 9:29 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) reopened by
- How about the documentation…
- 8:28 AM Changeset [3582] by
- Reverting build.xml, accidental last checkin of build.xml
- 8:23 AM Changeset [3581] by
- Merged log:trunk#3533:3580 into the wwebservices branch.
- 8:02 AM Changeset [3580] by
- Fixes #690: Not allowed to read Extra value type
- 8:02 AM Ticket #690 (Not allowed to read Extra value type) closed by
- fixed: (In [3580]) Fixes #690: Not allowed to read Extra value type
- 7:41 AM Ticket #690 (Not allowed to read Extra value type) reopened by
- Found a few more places where there is the same problem
Jul 19, 2007:
- 11:11 PM Changeset [3579] by
- Fixed incorrect tooltip for "Extra value types" menu item
- 11:10 PM Ticket #690 (Not allowed to read Extra value type) closed by
- fixed: (In [3578]) Fixes #690: Not allowed to read Extra value type
- 11:10 PM Changeset [3578] by
- Fixes #690: Not allowed to read Extra value type
- 11:07 PM Ticket #690 (Not allowed to read Extra value type) updated by
-
Milestone, Owner, Status, Description, Priority changed
Hmmm... BASE by default give guests USE permission to extra value … - 6:33 PM Changeset [3577] by
- fixed typo in docs
- 3:48 PM Changeset [3576] by
- References #451 Avoid null pointer exception
- 3:48 PM Ticket #451 (Zipped download) updated by
- (In [3576]) References #451 Avoid null pointer exception
- 3:42 PM Changeset [3575] by
- Fixes #685 Add plugin parameter asking for bioassays to …
- 3:42 PM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) closed by
- fixed: (In [3575]) Fixes #685 Add plugin parameter asking for bioassays to …
- 2:49 PM Ticket #690 (Not allowed to read Extra value type) updated by
- Forgot to say that the experiment name is "Blood-fed adult female …
- 2:46 PM Ticket #690 (Not allowed to read Extra value type) created by
- I've loaded an experiment as an administrator, all within a project. …
- 1:01 PM Ticket #689 (Increase 99 hits per page limit (list views)) created by
- I found that sharing via projects isn't exactly what I need (the other …
- 12:31 PM Tickets #688,658 batch updated by
- (In [3574]) References #658: Compare requestId as strings instead of …
- 12:31 PM Changeset [3574] by
- References #658: Compare requestId as strings instead of integers to …
- 11:49 AM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) updated by
- This is probably caused by the problem described in #688
- 11:48 AM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) created by
- A float doesn't have enough precision to be able to parse with correct …
- 10:35 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) updated by
-
Status, Owner changed
- 9:49 AM Changeset [3573] by
- References #680: Fixed a bug that caused the column mapping tab to …
- 9:49 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) updated by
- (In [3573]) References #680: Fixed a bug that caused the column …
- 9:22 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) updated by
-
Status, Owner changed
- 9:16 AM Changeset [3572] by
- Fixes #451 This plugin is now installed with BASE as a core plugin and …
- 9:16 AM Ticket #451 (Zipped download) closed by
- fixed: (In [3572]) Fixes #451 This plugin is now installed with BASE as a …
- 8:47 AM Ticket #451 (Zipped download) updated by
- (In [3571]) References #451 Some minor bugs are fixed.
- 8:47 AM Changeset [3571] by
- References #451 Some minor bugs are fixed.
- 8:45 AM Ticket #551 (Read "Plugin developer" section) updated by
- (In [3570]) References #551. Moved (and updated) documentation about …
- 8:45 AM Changeset [3570] by
- References #551. Moved (and updated) documentation about analysis …
- 8:43 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) updated by
-
Description changed
- 8:42 AM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) updated by
-
Description changed
- 8:29 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) closed by
- fixed: (In [3569]) Fixes #684: AbstractAnalysisPlugin should not include …
- 8:29 AM Changeset [3569] by
- Fixes #684: AbstractAnalysisPlugin should not include [Item.BIOASSAYS, …
- 8:23 AM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) created by
- To make this work we need to create an interface (say …
- 8:19 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) created by
- Once ticket #685 is in place it should not be so difficult. The core …
- 8:15 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) created by
- This will make it easier to implement plug-ins that only work on a …
- 7:42 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) updated by
-
Status, Owner changed
- 7:42 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) created by
- This context is optional and is not supported by all plug-ins.
Jul 18, 2007:
- 10:58 PM Ticket #683 (Holding down SHIFT, CTRL or ALT when creating a new item should ...) created by
- Bob MacCallum wrote: > I don't know if this would be dangerous, but …
- 3:46 PM Ticket #451 (Zipped download) updated by
- (In [3568]) References #451 Packer plugin for zip, tar.gz and tar.bz2 …
- 3:46 PM Changeset [3568] by
- References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
- 2:43 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- worksforme: I am not able to reproduce this
- 2:41 PM Ticket #670 (Update doc on formulas and extravalues) closed by
- invalid: There is no documentation written that can be updated.
- 2:39 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) closed by
- duplicate: Duplicate of #509. This is a problem with MySQL. You have the …
- 1:54 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) created by
- Hi! After BASE2 first start i loaded some plugin for Affy (RMA e …
- 11:42 AM Changeset [3567] by
- Fixes #681
- 11:42 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) closed by
- fixed: (In [3567]) Fixes #681
- 11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) updated by
-
Owner, Status changed
- 11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) created by
- The plug-in/job configuration wizard automatically selects the item …
- 10:41 AM Tickets #678,679,680 batch updated by
- fixed: (In [3566]) Fixes #678, #679, #680
- 10:41 AM Changeset [3566] by
- Fixes #678, #679, #680
- 9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) updated by
-
Status, Owner changed
- 9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) created by
- 9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) updated by
-
Owner, Status changed
- 9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) created by
- Currently, only the regular expressions, and other parser settings are …
- 9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) updated by
-
Status, Owner changed
- 9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) created by
- 1. Enter a plug-in configuration sequence for one of the flat file …
Jul 17, 2007:
- 1:34 PM Ticket #326 (Mass annotation plug-in) updated by
-
Owner, Status changed
- 1:33 PM Changeset [3565] by
- References #551: Moved doc about import plug-ins from old to new …
- 1:33 PM Ticket #551 (Read "Plugin developer" section) updated by
- (In [3565]) References #551: Moved doc about import plug-ins from old …
- 11:28 AM Changeset [3564] by
- Fixes #675, #676 and #677
- 11:28 AM Tickets #675,676,677 batch updated by
- fixed: (In [3564]) Fixes #675, #676 and #677
- 10:57 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) updated by
-
Owner, Status changed
- 10:57 AM Ticket #676 (The autodetect file format function doesn't check ...) updated by
-
Status, Owner changed
- 10:57 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) updated by
-
Owner, Status changed
- 9:56 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) created by
- 9:54 AM Ticket #676 (The autodetect file format function doesn't check ...) created by
- 9:53 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) created by
- 7:50 AM Ticket #551 (Read "Plugin developer" section) updated by
-
Status, Owner changed
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