Timeline
Mar 8, 2007:
- 4:45 PM Changeset [3177] by
- Import data doc
- 2:24 PM Ticket #508 ('We' shouldn't be looking for file formats) updated by
-
Description changed
- 11:27 AM Changeset [3176] by
- added image
- 10:57 AM Changeset [3175] by
- fixed linkes fixed some methodname tags
- 10:32 AM Changeset [3174] by
- Fixed problem with building docbook in windows.
- 10:02 AM Ticket #508 ('We' shouldn't be looking for file formats) created by
- The message when no file format were found look like this: 'We …
- 9:01 AM Changeset [3173] by
- Added a job chapter in the documentation
- 8:51 AM Ticket #505 (where should be were) closed by
- fixed: (In [3172]) Fixes #505 where should be were
- 8:50 AM Changeset [3172] by
- Fixes #505 where should be were
- 8:38 AM Ticket #507 (Path to icons in bioassayset list contains double slash) closed by
- fixed: (In [3171]) Fixes #507 Path to icons in bioassayset list contains …
- 8:38 AM Changeset [3171] by
- Fixes #507 Path to icons in bioassayset list contains double slash
- 8:05 AM Ticket #507 (Path to icons in bioassayset list contains double slash) updated by
-
Status changed
Mar 7, 2007:
- 8:22 PM Ticket #507 (Path to icons in bioassayset list contains double slash) created by
- See the report on the mailing list: …
- 8:00 PM Ticket #506 (Tried to move a file a caused an error) closed by
- invalid: The error message might be a bit cryptic but actually means that there …
- 6:15 PM Changeset [3170] by
- jsp section added and some examples removed
- 3:18 PM Changeset [3169] by
- checked with aspell
- 2:31 PM Ticket #506 (Tried to move a file a caused an error) created by
- Tried to move a file from Administrator's hom account to template/raw …
- 12:46 PM Changeset [3168] by
- text for InteractivePlugin.getRequestInformation added
Mar 6, 2007:
- 5:37 PM Changeset [3167] by
- 5:32 PM Changeset [3166] by
- added text to section interfaces/plugin
- 4:48 PM Changeset [3165] by
- Introduction to import and export data - documentation
- 4:04 PM Changeset [3164] by
- The first section in a chapter is now placed in a seperated file when …
- 1:32 PM Changeset [3163] by
- First text written
- 11:25 AM Changeset [3162] by
- Added copyright text to userdoc/index.xml and some more changes to TOC …
- 8:45 AM Changeset [3161] by
- Added "id" attribute to each part and chapter in the docbook book. …
Mar 5, 2007:
- 4:47 PM Changeset [3160] by
- Added the files for developer documentation and set the parser to …
- 4:24 PM Changeset [3159] by
- Changed the way the "chapter" files are included in the documentation …
- 3:09 PM Changeset [3158] by
- Created files for admin documentation
- 2:43 PM Changeset [3157] by
- Created files for user- and overview documentation
- 2:12 PM Ticket #505 (where should be were) updated by
-
Owner, Description, Milestone changed
Should be simple to fix. Search all list_*.jsp pages and replace. - 1:47 PM Changeset [3156] by
- Added info about how to build the docbook documentation. Clean up …
- 1:38 PM Changeset [3155] by
- Ignore generated docbook documentation
- 1:35 PM Changeset [3154] by
- A couple of more new lines to the contents of documentation
- 1:34 PM Changeset [3153] by
- Added docbook DTD:s and stylesheets
Mar 1, 2007:
- 2:48 PM Ticket #505 (where should be were) created by
- 'Where' is displayed when 'were' is expected For example * No …
Feb 26, 2007:
- 12:22 PM Changeset [3152] by
- Fixes #499: Add Hql.entity(BasicData) method
- 12:22 PM Ticket #499 (Add Hql.entity(BasicData) method) closed by
- fixed: (In [3152]) Fixes #499: Add Hql.entity(BasicData) method
- 12:14 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by
-
Status, Milestone changed
- 12:10 PM Changeset [3151] by
- Added line about API changes and backwards compatibility
- 11:45 AM Ticket #501 (Make members of a project readable by all other members) closed by
- fixed: (In [3150]) Fixes #501: Make members of a project readable by all …
- 11:44 AM Changeset [3150] by
- Fixes #501: Make members of a project readable by all other members
- 10:49 AM Ticket #501 (Make members of a project readable by all other members) updated by
-
Status changed
- 10:48 AM Changeset [3149] by
- Fixes #502: Experiment Overview warns about missing 'Required by …
- 10:48 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) closed by
- fixed: (In [3149]) Fixes #502: Experiment Overview warns about missing …
- 10:47 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by
-
Status, Summary changed
Feb 25, 2007:
- 6:12 PM Ticket #503 (Display more info about items in Experiment overview) updated by
-
Description changed
- 6:11 PM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) updated by
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Description changed
- 11:34 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) created by
- Also, display information about which item the annotation is inherited …
- 11:32 AM Ticket #503 (Display more info about items in Experiment overview) created by
- When you click on an item in the tree on the left side the right side …
- 11:28 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) updated by
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Milestone, Owner, Component changed
I am not sure but the […] on line 1581 seems strange. It should …
Feb 24, 2007:
- 7:10 PM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) created by
- WindowsXP Apache 5.5.15 Base2.3.0 trunk -AnnotationType defined and …
- 6:40 PM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) updated by
- Still on the Experiment Item View, Allow Editing of Experimental …
Feb 23, 2007:
- 8:45 PM Ticket #501 (Make members of a project readable by all other members) created by
- To get READ permission for a USER item the logged in user must either …
- 8:42 PM Ticket #500 (Document the Include class) updated by
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Owner, Component changed
- 8:42 PM Ticket #500 (Document the Include class) created by
- As it is now it is not very useful. * There is no information about …
- 8:37 PM Ticket #499 (Add Hql.entity(BasicData) method) updated by
-
Summary changed
- 8:36 PM Ticket #499 (Add Hql.entity(BasicData) method) created by
- To complement the Hql.entity(BasicItem) method.
- 4:12 PM Changeset [3148] by
- Contents of documentation
- 8:14 AM Changeset [3147] by
- References #146. Added help texts for user.preferences
- 8:14 AM Ticket #146 (Add help text to the web gui) updated by
- (In [3147]) References #146. Added help texts for user.preferences
- 5:54 AM Changeset [3146] by
- More added to the content of documentation
Feb 21, 2007:
- 3:37 PM Changeset [3145] by
- Added more to the content of documentation
- 3:24 PM Ticket #498 (Move Array batches on Array design view page) updated by
-
Description changed
- 3:23 PM Ticket #498 (Move Array batches on Array design view page) created by
- Array batches tend to be very far down on a view page for an array …
- 11:05 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by
-
Summary changed
Feb 20, 2007:
- 3:13 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) closed by
- fixed: (In [3144]) Fixes #484 Export plug-in is not shown in plug-ins list
- 3:13 PM Changeset [3144] by
- Fixes #484 Export plug-in is not shown in plug-ins list
- 3:11 PM Changeset [3143] by
- Added draft for table of contents of documentation
- 2:44 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by
-
Owner changed
Change the text to "Analyse" sounds like a good idea. This is web so I … - 10:52 AM Changeset [3142] by
- Fixes #493 Trashcan display item owned by other users in some cases
- 10:52 AM Ticket #493 (Trashcan display item owned by other users in some cases) closed by
- fixed: (In [3142]) Fixes #493 Trashcan display item owned by other users in …
- 10:35 AM Changeset [3141] by
- Bumped version to 2.2.2pre
- 9:12 AM Changeset [3140] by
- Fixes #495: Pb when creating Hybs from Labeled Extracts View Page
- 9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) closed by
- fixed: (In [3140]) Fixes #495: Pb when creating Hybs from Labeled Extracts …
- 9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) updated by
-
Milestone, Status, Owner changed
- 9:08 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) closed by
- fixed: (In [3139]) Fixes #496: Minor Display Glitch on 'Annotation & …
- 9:08 AM Changeset [3139] by
- Fixes #496: Minor Display Glitch on 'Annotation & Parameter' Tab on …
- 9:05 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) updated by
-
Owner, Milestone, Priority, Status changed
- 9:05 AM Ticket #493 (Trashcan display item owned by other users in some cases) updated by
-
Status, Owner changed
- 8:34 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) closed by
- fixed: (In [3138]) Fixes #497: Floating point numbers with leading zeroes in …
- 8:34 AM Changeset [3138] by
- Fixes #497: Floating point numbers with leading zeroes in the decimal …
- 8:30 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by
-
Summary changed
- 8:29 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) updated by
-
Priority, Status, Owner, Milestone changed
Feb 19, 2007:
- 1:55 PM Ticket #494 (Unexpected Error on JSP for Experiment Overview) closed by
- fixed: (In [3137]) Fixes #494 Unexpected Error on JSP for Experiment Overview
- 1:55 PM Changeset [3137] by
- Fixes #494 Unexpected Error on JSP for Experiment Overview
- 11:11 AM Ticket #466 (Remaining Quantity not display in extracts) closed by
- fixed: (In [3136]) Fixes #466 Remaining Quantity not displayed in extracts.
- 11:11 AM Changeset [3136] by
- Fixes #466 Remaining Quantity not displayed in extracts.
Feb 16, 2007:
- 9:10 AM Changeset [3135] by
- Added missing import statement.
- 9:04 AM Changeset [3134] by
- Changed to also get shared projects.
- 8:58 AM Changeset [3133] by
- Merged log:trunk#3001:3128 into this branch.
Feb 15, 2007:
- 3:11 PM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 11:06 AM Ticket #494 (Unexpected Error on JSP for Experiment Overview) updated by
-
Owner, Component, Milestone changed
I think this happens if there is a raw bioassay without annotations. … - 9:56 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 9:50 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 9:40 AM Ticket #494 (Unexpected Error on JSP for Experiment Overview) created by
- I have loaded 2 experiments, one gives me the following problem …
Feb 13, 2007:
- 9:45 AM Ticket #493 (Trashcan display item owned by other users in some cases) created by
- If logged in as a user with admin permissions this user is able to see …
- 9:35 AM Ticket #466 (Remaining Quantity not display in extracts) updated by
- I don't think the updateToSchemaVersion29() works for Postgres. See …
- 8:49 AM Ticket #466 (Remaining Quantity not display in extracts) updated by
-
Status changed
- 8:48 AM Ticket #466 (Remaining Quantity not display in extracts) updated by
-
Owner, Status changed
- 2:05 AM Changeset [3132] by
- Removed stray carriage return characters.
- 2:03 AM Changeset [3131] by
- Removed stray carriage return characters.
- 1:42 AM Changeset [3130] by
- Fixed Id tag.
Feb 12, 2007:
- 1:31 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) closed by
- fixed: (In [3129]) Fixes #489: Build #0 is reported after upgrade to 2.2 and …
- 1:31 PM Changeset [3129] by
- Fixes #489: Build #0 is reported after upgrade to 2.2 and 2.2.1 …
- 12:01 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) updated by
-
Milestone changed
- 12:00 PM Ticket #490 (BASE demo server issue) updated by
-
Milestone changed
- 11:59 AM Ticket #490 (BASE demo server issue) closed by
- fixed
- 11:59 AM Ticket #486 (Import raw data from the Illumina platform) updated by
-
Milestone changed
- 11:58 AM Ticket #485 (A user's group membership is not listed.) updated by
-
Milestone changed
- 11:57 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by
-
Milestone changed
- 11:56 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) updated by
-
Milestone changed
Change the 'run plug-in' message in GUI to 'run analysis'. - 11:54 AM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) updated by
-
Milestone changed
- 11:53 AM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) updated by
-
Milestone changed
- 11:52 AM Ticket #479 (BioAssaySetExport should allow immediate download.) updated by
-
Milestone, Version changed
- 11:52 AM Ticket #470 (Improve batch upload to support tar:ed files) updated by
-
Milestone, Version changed
- 11:51 AM Ticket #469 (Improve error handling of invalid values in import plugins) updated by
-
Milestone changed
- 11:50 AM Ticket #456 (Mass edit) updated by
-
Milestone changed
- 11:48 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) updated by
-
Milestone changed
- 11:48 AM Ticket #445 (Plug-in writers should check that the plug-in has the proper ...) updated by
-
Milestone changed
- 11:44 AM Ticket #435 (A check for reporter information is needed when adding/using ...) updated by
-
Milestone changed
- 11:44 AM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) updated by
-
Milestone changed
- 11:41 AM Ticket #411 (Extending compressed file support and storage) updated by
-
Milestone changed
- 11:37 AM Ticket #375 (Shared items: the shareness of items should be listed in the ...) updated by
-
Milestone changed
- 11:36 AM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) updated by
-
Milestone changed
- 11:33 AM Ticket #358 (Better info from Migration tool) updated by
-
Milestone changed
- 11:32 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) updated by
-
Milestone changed
- 11:32 AM Ticket #349 (Callback for events to plugins) closed by
- wontfix
- 11:31 AM Ticket #338 (Tab2Mage import plugin) updated by
-
Milestone changed
- 11:31 AM Ticket #337 (Tab2Mage export plugin) updated by
-
Milestone changed
- 11:30 AM Ticket #333 (Administrator documentation) updated by
-
Milestone changed
- 11:30 AM Ticket #326 (Mass annotation plug-in) updated by
-
Milestone changed
- 11:29 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
- Performance tuning for the whole application is also needed.
- 11:28 AM Ticket #294 (Performance testing: Plugin-in execution time) updated by
-
Milestone changed
- 11:27 AM Ticket #252 (Make the trashcan smarter when deleting items) updated by
-
Milestone changed
- 11:26 AM Ticket #212 (Array slide import plugin) closed by
- wontfix
- 11:23 AM Ticket #146 (Add help text to the web gui) updated by
-
Milestone changed
- 11:22 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by
-
Priority, Milestone changed
- 11:22 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) updated by
-
Milestone changed
- 11:22 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) updated by
-
Milestone changed
- 11:21 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) updated by
-
Priority changed
- 11:21 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) updated by
-
Milestone, Priority changed
- 11:20 AM Ticket #23 (Apply button in popup windows?) closed by
- wontfix
- 11:17 AM Ticket #338 (Tab2Mage import plugin) updated by
-
Milestone changed
- 11:16 AM Ticket #492 (Web services) created by
- The outline for the web services implementation: 1. We are going to …
Feb 9, 2007:
- 10:26 PM WikiStart edited by
- Replaced 2.0 with 2. Also removed ref to old demo server. (diff)
- 4:39 PM Changeset [3128] by
- Added javadoc
- 12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) updated by
-
Description changed
- 12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) created by
- which it should not do. The ExperimentalFactors tag is an internal …
- 1:57 AM Ticket #490 (BASE demo server issue) created by
- […]
Feb 8, 2007:
- 4:04 PM Milestone BASE 2.2.1 completed
- Bug fixes for the 2.2 release.
- 4:04 PM Changeset [3127] by
- Removed obsolete branch 2.2.1.
- 3:57 PM Changeset [3126] by
- Merged log:branches/2.2.1#3119:3123 trunk.
- 2:39 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) created by
- 2:35 PM DownloadPage edited by
- 2.2.1 released. (diff)
- 2:28 PM Changeset [3125] by
- New bug six branch for 2.2
- 2:18 PM Changeset [3124] by
- Tagging version 2.2.1
- 2:17 PM Changeset [3123] by
- Bumped version to 2.2.1
- 2:04 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) closed by
- fixed: This issue is returned to the original ticket:466. The upgrade problem …
- 1:53 PM Ticket #466 (Remaining Quantity not display in extracts) reopened by
- Reopened since the previous upgrade failed.
- 12:11 PM Ticket #487 (Update script must check the schema version before trying to update) closed by
- fixed: (In [3122]) Fixes #487. Update script must check the schema version …
- 12:11 PM Changeset [3122] by
- Fixes #487. Update script must check the schema version before trying …
- 11:48 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- (In [3121]) References #488. Update schema version without validating …
- 11:47 AM Changeset [3121] by
- References #488. Update schema version without validating the measured …
- 10:39 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- (In [3120]) References #488. Update schema version without validating …
- 10:38 AM Changeset [3120] by
- References #488. Update schema version without validating the measured …
- 10:10 AM DownloadPage edited by
- (diff)
- 2:22 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- I upgraded a couple of more servers. I noticed that servers that …
- 1:57 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- Trying to run the update script once more on the same database gives …
- 1:53 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- Updating another server gives a similar stack trace as Chrises […]
- 1:42 AM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
- I have successfully upgraded from 2.1.2 to 2.2. This is of course not …
Feb 7, 2007:
- 11:44 PM Ticket #487 (Update script must check the schema version before trying to update) updated by
- I checked the code and the first place to check the schema version is …
- 11:24 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
-
Description changed
- 11:23 PM Ticket #487 (Update script must check the schema version before trying to update) updated by
-
Description changed
- 11:15 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) updated by
-
Summary changed
- 11:14 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) created by
- Here is the stacktrace: […] For more info see the mailing list …
- 11:10 PM Ticket #487 (Update script must check the schema version before trying to update) created by
- If the schema version is higher than expected the update script must …
- 12:45 PM DownloadPage edited by
- (diff)
- 12:45 PM DownloadPage edited by
- (diff)
- 12:36 PM Milestone BASE 2.2 completed
- Doc, help, larger feature changes.
- 12:36 PM DownloadPage edited by
- Releasing v2.2 (diff)
- 12:21 PM Changeset [3119] by
- New bug fix branch for 2.2
- 12:18 PM Ticket #457 (Update install instructions for release 2.2) closed by
- fixed
- 12:17 PM Changeset [3118] by
- Tagging version 2.2
- 12:15 PM Changeset [3117] by
- Changed link to BASE (MeV) hacks site.
- 11:14 AM Changeset [3116] by
- Bumped version number to 2.2.0. Added Micha to contribution list.
- 9:57 AM Changeset [3115] by
- Added text on how to stop unintentional migration.
- 2:14 AM Changeset [3114] by
- Cleaning.
- 2:13 AM Changeset [3113] by
- Updated installation document.
- 2:13 AM Changeset [3112] by
- Removed MeV export of an unneeded reporter column.
- 12:51 AM Changeset [3111] by
- Added MeV to the list of 3rd party components and to the tools list.
Feb 6, 2007:
- 4:18 PM Ticket #10 (Analysis: Hierarchical clustering) closed by
- fixed: Hierarchical clustering is now supported through MeV …
- 4:17 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) closed by
- fixed: MeV is now integrated as a Java Web Start application. It requires …
- 3:59 PM Ticket #464 (Permission denied when creting AnyToAny) closed by
- fixed
- 3:55 PM Changeset [3110] by
- Addresses #10 and #352. Unique temporary filenames used at client side.
- 3:55 PM Tickets #10,352 batch updated by
- (In [3110]) Addresses #10 and #352. Unique temporary filenames used at …
- 3:54 PM Changeset [3109] by
- Blank experimental factor labels are propagated properly in MeV export.
- 3:28 PM Changeset [3108] by
- BASE1PluginExecuter uses BioAssaySetExporter to create basefile
- 3:26 PM Ticket #439 (Base file export) closed by
- fixed: (In [3107]) Fixes #439
- 3:26 PM Changeset [3107] by
- Fixes #439
- 3:11 PM Changeset [3106] by
- Addresses #10 and #352. Removed hard coded indexes for datamatrix …
- 3:11 PM Tickets #10,352 batch updated by
- (In [3106]) Addresses #10 and #352. Removed hard coded indexes for …
- 3:09 PM Tickets #10,352 batch updated by
- (In [3105]) Addresses #10 and #352. MeV uses system tmp directory …
- 3:09 PM Changeset [3105] by
- Addresses #10 and #352. MeV uses system tmp directory system properties.
- 11:03 AM Ticket #146 (Add help text to the web gui) updated by
- (In [3104]) References #146. Added help texts for view user
- 11:03 AM Changeset [3104] by
- References #146. Added help texts for view user
- 11:00 AM Ticket #146 (Add help text to the web gui) updated by
- (In [3103]) References #146. Modified the function of the toolbar that …
- 11:00 AM Changeset [3103] by
- References #146. Modified the function of the toolbar that is used to …
- 10:14 AM Ticket #486 (Import raw data from the Illumina platform) created by
- A discussion about importing raw data from the Illumina platform was …
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