Base1PluginExecuter throw PermissionDeniedException: Data cube has already been committed

[Nicklas Nordborg]

I'm running base-2.4.2 on tomcat 6.0.14.

I'm running a base1 plugin. When I run it on the commandline on one of the stdin.txt-s that base2 creates it runs successfully and prints nothing to my console.

WHen running it in base it generates data, runs, indicates that it's importing data and then hangs for a long time with this in the job's status: Status: Executing: Reading from error stream.

After some time I see this in the status: Error: Permission denied: Data cube has already been committed: Data cube[id=24]

Thank you!

Chad Matsalla

[1]
net.sf.basedb.core.PermissionDeniedException: Permission denied: Data
cube has already been committed: Data cube[id=21]
at
net.sf.basedb.core.BioAssaySet.getPositionBatcher(BioAssaySet.java:781)
at
net.sf.basedb.plugins.Base1PluginExecuter.importData(Base1PluginExecuter.java:1542)
at
net.sf.basedb.plugins.Base1PluginExecuter.run(Base1PluginExecuter.java:700)
at
net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:89)
at
net.sf.basedb.core.InternalJobQueue$JobRunner.run(InternalJobQueue.java:421)
at java.lang.Thread.run(Thread.java:595)

[Johan Enell]

(In [3915]) Fixes #795