Opened 12 years ago

Closed 12 years ago

#1379 closed enhancement (fixed)

Change default minimum intensity value and add support for 0=all blocks to median ratio normalizer

Reported by: jari Owned by: Nicklas Nordborg
Priority: major Milestone: BASE 2.14
Component: coreplugins Version:
Keywords: Cc:

Description

In BASE2 plugin 'Normalization: Median ratio', parameter Blockgroup size can not be set to 0 (must be 1 or larger).

This should be changed so that Blockgroup size = 0 = use all blocks as a single group (just as it works in BASE2 plugin 'Normalization: Lowess').

Ideally, setting Blockgroup size = 0 should enable the plugin to run irrespectively of whether block information is available for bioassays. Such as in the case where connection to rawdata table is lost, e.g., after running BASE1 plug-in virtual array.

Also, the default value for Minimum intensity should be changed to 0 since it behaves like a filter. The default value should keep all data.

Change History (3)

comment:1 Changed 12 years ago by Nicklas Nordborg

Owner: changed from everyone to Nicklas Nordborg
Status: newassigned

comment:2 Changed 12 years ago by Nicklas Nordborg

Summary: Suggestions for 'Normalization: Median ratio' plug-in improvementsChange default minimum intensity value and add support for 0=all blocks to median ratio normalizer

comment:3 Changed 12 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [5103]) Fixes #1379: Change default minimum intensity value and add support for 0=all blocks to median ratio normalizer

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