Opened 11 years ago

Closed 11 years ago

Last modified 11 years ago

#1362 closed enhancement (fixed)

Validate the number of raw data spots against the number of array design features

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: minor Milestone: BASE 2.13
Component: web Version:
Keywords: Cc:

Description

In some cases the number of raw data spots imported to a raw bioassay is (very) different from the number of features on the associated array design. See http://www.mail-archive.com/basedb-users@lists.sourceforge.net/msg01795.html for some background info.

This situation could be detected by a validator that issues a warning if the numbers aren't close enough. A threshold could be specified as a configurable preset. 5% has been suggested as a good default.

Change History (3)

comment:1 Changed 11 years ago by Nicklas Nordborg

Owner: changed from everyone to Nicklas Nordborg
Status: newassigned

comment:2 Changed 11 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [5076]) Fixes #1362: Validate the number of raw data spots against the number of array design features

comment:3 Changed 11 years ago by Nicklas Nordborg

(In [5081]) References #1362: Validate the number of raw data spots against the number of array design features

Need to ignore this test with Affymetrix data since the array design has the number of probesets while the raw bioassay has the number of cells. The numbers are very different since one probeset is made up of multiple cells.

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