Affymetrix probe set importer 2 Works for HG-U133A maxDataColumns Max data columns The maximum number of columns for a line to be counted as a data line, or 0 to allow any number of columns. extendedColumnMapping.locusLink LocusLink trimQuotes Remove quotes If true quotes (" or ') around data value will be removed. java.lang.Boolean true charset Character set The character set used in the file, if not specified the default character set is used (ISO-8859-1). java.lang.String ISO-8859-1 scoreColumnMapping Score Mapping that picks the reporter's score in some context. This mapping is only used when importing to a reporter list. nameColumnMapping Name Mapping that picks the reporter's name from the data columns. For example: \Name\ java.lang.String \Probe Set ID\ extendedColumnMapping.markers Markers extendedColumnMapping.vector Vector The vector from which the reporter is derived extendedColumnMapping.nid NID descriptionColumnMapping Description Mapping that picks the reporter's description from the data columns. For example: \Description\ headerRegexp Header A regular expression that matches a header line and extracts the name and a value parts. For example, split on equal symbol: (.+)=(.*) reporterIdColumnMapping Reporter ID Mapping that picks the reporter's ID from the data columns. For example: \ID\ java.lang.String \Probe Set ID\ symbolColumnMapping Gene symbol Mapping that picks the reporter's gene symbol from the data columns. For example: \Gene symbol\ java.lang.String \Gene Symbol\ extendedColumnMapping.antibiotics Antibiotics extendedColumnMapping.omim OMIM extendedColumnMapping.chromosome Chromosome The chromosome from which the reporter is derived reporterType Reporter type The reporter type assigned to the imported reporters dataHeaderRegexp Data header A regular expression that matches the header line just before the data begins. For example: Block\tRow\tColumn.* java.lang.String "Probe Set ID"\t"GeneChip Array"\t.* dataSplitterRegexp Data splitter A regular expression that splits each data line into individual columns. For example, split on tabs: \t java.lang.String \t extendedColumnMapping.length Length The length of the sequence extendedColumnMapping.tissue Tissue The tissue from which the reporter is derived extendedColumnMapping.accession Accession minDataColumns Min data columns The minimum number of columns for a line to be counted as a data line. ignoreRegexp Ignore A regular expression that matches any line that should be ignored. For example, ignore lines starting with #: ^#.* reporterTypeColumnMapping Reporter type Mapping that pick the reporter's type from the data columns. This will overide the reporter type parameter. For example: \Reporter type\ extendedColumnMapping.library Library The library from which the reporter is derived extendedColumnMapping.clusterId Cluster ID A unique identifier for a Unigene entry java.lang.String \UniGene ID\ decimalSeparator Decimal separator The decimal separator used in numeric values, if not specified dot is assumed. java.lang.String dot dataFooterRegexp Data footer A regular expression that matches the first line of non-data after the data lines. For example: __END_OF_DATA__ extendedColumnMapping.cytoband Cytoband The cytoband from which the reporter is derived extendedColumnMapping.sequence Sequence The nucleotide sequence of the reporter extendedColumnMapping.species Species The organism from which the reporter is derived