AbstractSourceItemTransformer |
Abstract base class for source item transformers that can be useful
for implementing some common functionality.
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AbstractSourceItemTransformerFactory |
Abstract base class for source item transformer factories that can be useful
for implementing some common functionality.
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BioSourceToSampleTransformer |
Source item transformer that transform biosource items to their child
samples.
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CollectedExtractsToDerivedBioAssayTransformer |
Source item transformer implementation that transform collected extract items
to derived bioassays.
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CollectedExtractsToRawBioAssayTransformer |
Source item transformer implementation that transform collected extract items
to raw bioassays.
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CollectExtracts |
Collect extracts seen on derived bioassays and raw bioassays that
has been loaded by other transformers.
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DerivedBioAssayToChildDerivedBioAssayTransformer |
Source item transformer implementation that transform derived bioassay items
to child derived bioassays.
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DerivedBioAssayToParentDerivedBioAssayTransformer |
Source item transformer implementation that transform derived bioassay items
to parent derived bioassays.
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DerivedBioAssayToPhysicalBioAssayTransformer |
Source item transformer implementation that transform derived bioassay items
to physical bioassays.
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DerivedBioAssayToRawBioAssayTransformer |
Source item transformer implementation that transform derived bioassay items
to raw bioassays.
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ExtractToChildExtractTransformer |
Source item transformer implementation that transform extract items to their
child extract items.
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ExtractToParentExtractTransformer |
Source item transformer implementation that transform extract items to their
parent extract items.
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ExtractToPhysicalBioAssayTransformer |
Source item transformer implementation that transform extract items to physical bioassays.
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ExtractToSampleTransformer |
Source item transformer that transform extract items to their parent
samples.
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ListableUtil |
Utility class for working with Listable items.
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PhysicalBioAssayToDerivedBioAssayTransformer |
Source item transformer implementation that transform physical bioassay items
to derived bioassays.
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PhysicalBioAssayToExtractTransformer |
Source item transformer implementation that transform physical bioassay items
to extracts.
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PushToParentsTransformer |
Transformer implementation that can be used to to find parent items
to children that have a subtype with the "push annotations to parent"
flag set.
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RawBioAssayToDerivedBioAssayTransformer |
Source item transformer implementation that transform raw bioassay items
to derived bioassays.
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RestrictionTransformer |
Transformer implementation that is intended to provide a final
filtering of target items.
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SampleToBioSourceTransformer |
Source item transformer that transform sample items to their parent
biosources.
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SampleToChildSampleTransformer |
Source item transformer implementation that transform sample items to their
child sample items.
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SampleToExtractTransformer |
Source item transformer that transform sample items to their child
extract.
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SampleToParentSampleTransformer |
Source item transformer implementation that transform sample items to their
parent sample items.
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SourceItemTransformerChain |
Chains together one or more source item transformers.
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SourceItemTransformerWithCache |
This is a wrapper transformer factory that can be applied to any other
factory in order to provide support for caching.
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SourceItemTransformerWithCache.TransformerWithCache |
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ToBioSourceSourceItemTransformerFactory |
Transformer factory implementation for transforming to biosources.
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ToDerivedBioAssaySourceItemTransformerFactory |
Transformer factory implementation for transforming to derived bioassays.
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ToExtractSourceItemTransformerFactory |
Transformer factory implementation for transforming to extracts.
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ToPhysicalBioAssaySourceItemTransformerFactory |
Transformer factory implementation for transforming to physical bioassays.
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ToRawBioAssaySourceItemTransformerFactory |
Transformer factory implementation for transforming to raw bioassays.
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ToSampleSourceItemTransformerFactory |
Transformer factory implementation for transforming to samples.
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TransformCache |
A simple cache implementation for holding the result of source item to target item transformation.
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TransformCache.CacheEntry |
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TransformCache.CacheKey |
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TransformContext |
Transformation context that can be used to keep track of vital
information when doing multi-step transformations.
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