Class SectionAssaysParser

java.lang.Object
net.sf.basedb.util.importer.spotdata.SectionAssaysParser
All Implemented Interfaces:
BaseFileSectionParser

public class SectionAssaysParser
extends Object
implements BaseFileSectionParser
Parses the 'assays' section of a BASEfile with bioassay set spot data. This section is optional, but if it exists, it must define 'id' and 'name' columns of child bioassays. The 'id' must be the same as the id of a parent bioassay unless a 'parents' column is present. One or more parents can be given for each child. Separate the values with a /.

NOTE! The column names can be redefined by calling BaseFileParser.setRedefinedColumnName(String, String, String)

section assays
columns id\tname\tparents
count   2
%
100     The first child 1/2/3
101     The second child        4/5/6
Version:
2.14
Author:
Nicklas
Last modified
$Date: 2019-03-20 14:31:03 +0100 (ons, 20 mars 2019) $
  • Field Details

  • Constructor Details

    • SectionAssaysParser

      public SectionAssaysParser​(DbControl dc, BaseFileInfo info)
      Creates a new 'section assays' parser.
      Parameters:
      dc - The DbControl to use for database access
      info - Information collector for the file we are parsing
  • Method Details