Package net.sf.basedb.core.data

Class FeatureData

java.lang.Object
net.sf.basedb.core.data.BasicData
net.sf.basedb.core.data.FeatureData
All Implemented Interfaces:
BatchableData, IdentifiableData, NoAutoUnlinkAnyToAny
Direct Known Subclasses:
RawDataBatcher.FeatureProxy
public class FeatureData
extends BasicData
implements BatchableData, NoAutoUnlinkAnyToAny
This class holds information about a regular feature.
Version:
2.0
Author:
enell, Nicklas
See Also:
Feature, Developer documentation: Array LIMS (arrays)
Last modified
$Date: 2023-11-21 10:31:51 +0100 (Tue, 21 Nov 2023) $
Hibernate: class
table="`Features`" lazy="true"

  • Field Details

    • column

      private int column

    • row

      private int row

    • position

      private int position

    • MAX_EXTERNAL_ID_LENGTH

      public static final int MAX_EXTERNAL_ID_LENGTH
      The maximum length of the external ID that can be stored in the database.
      See Also:
      setExternalId(String), Constant Field Values

    • externalId

      private String externalId

    • arrayDesignBlock

      private ArrayDesignBlockData arrayDesignBlock

    • reporter

      private ReporterData reporter

    • well

      private WellData well

  • Constructor Details

    • FeatureData

      FeatureData()

    • FeatureData

      public FeatureData​(ArrayDesignBlockData arrayDesignBlock, WellData well)
      Create a new feature which is linked to a well. The reporter of the well is copied to the feature.

    • FeatureData

      public FeatureData​(ArrayDesignBlockData arrayDesignBlock, ReporterData reporter)
      Create a new feature which is linked to a reporter only.

  • Method Details

    • getColumn

      public int getColumn()
      Get the column coordinate of the feature.
      Hibernate: property
      type="int" update="false"
      Hibernate: column
      name="`column`" not-null="true"

    • setColumn

      public void setColumn​(int column)

    • getRow

      public int getRow()
      Get the row coordinate of the feature.
      Hibernate: property
      type="int" update="false"
      Hibernate: column
      name="`row`" not-null="true"

    • setRow

      public void setRow​(int row)

    • getPosition

      public int getPosition()
      Get the position number of the feature. The value is automatically assigned by the core.
      Hibernate: property
      column="`position`" type="int" not-null="true" update="false"

    • setPosition

      public void setPosition​(int position)
      This method was private until 2.6. The value will be overwritten with an autogenerated value unless the feature identification method is POSITION. The value must be a positive integer.
      Since:
      2.6

    • getExternalId

      public String getExternalId()
      Get the external id for this FeatureData item. If given, it must be unique per array design.
      Returns:
      The features external ID.
      Since:
      2.6
      Hibernate: property
      column="`external_id`" type="string" length="255" not-null="false" update="false"

    • setExternalId

      public void setExternalId​(String externalId)

    • getArrayDesignBlock

      ArrayDesignBlockData getArrayDesignBlock()
      Get the arraydesignblock of this feature. Cannot be public since we don't want to expose data objects to clients.
      Hibernate: column
      name="`arraydesignblock_id`" not-null="true"
      Hibernate: many-to-one
      outer-join="false" update="false"

    • setArrayDesignBlock

      void setArrayDesignBlock​(ArrayDesignBlockData arrayDesignBlock)

    • getReporter

      public ReporterData getReporter()
      Get the reporter of the feature. This property is mapped in the hibernate-properties-FeatureData.xml file since it must be mapped with a cascade="evict" which is not supported by XDoclet.

    • setReporter

      void setReporter​(ReporterData reporter)

    • getWell

      WellData getWell()
      Get the well of the feature. Cannot be public since we don't want to expose data objects to clients.
      Hibernate: many-to-one
      column="`well_id`" not-null="false" update="false" outer-join="false"

    • setWell

      void setWell​(WellData well)