Class Summary |
AnnotationTransfer |
Base 1 tables
SampleAnnotation
|
AnnotationTypeTransfer |
Base 1 tables
SampleAnnotationType
Unused columns
addedDate
Notes
Enumerated annotations are all of Type.STRING . |
ArrayBatchTransfer |
Base 1 tables
ArrayBatch
Unused columns
addedDate, printStartDate, printEndDate
Notes
ArrayType is named ArrayDesign in BASE 2. |
ArrayBlockTransfer |
Base 1 tables
ArrayBlock
Unused columns
featureDiameter
Notes
ArrayType is named ArrayDesign in BASE 2. |
ArraySlideTransfer |
Base 1 tables
UserGroup
Unused columns
addedDate, hybridization
Notes
Barcodes for slides are not available in base 1. |
ArrayTypePlateTransfer |
Base 1 tables
ArrayTypePlate
Notes
Plates associated with non existing ArrayType's will not be migrated,
these are considered bad entries. |
ArrayTypeTransfer |
Base 1 tables
ArrayType
Unused columns
addedDate, platform, protocol, printed, printMapName, featureLock,
featureCount, blankFeatures
Notes
ArrayType is named ArrayDesign in BASE 2. |
CommonItemTransfer |
Common items have a specific set of columns in Base 1. |
ExperimentTransfer |
Base 1 tables
Experiment, ExperimentRawBioAssay
Unused columns
Experiment: addedDate, channels, hasMageml, extraColumnTables,
diskUsage
Notes
|
ExtractTransfer |
Base 1 tables
Extract
Unused columns
addedDate
|
FileTransfer |
This class provides methods to transfer base 1 items that correspond to the
File object in BASE 2. |
GroupTransfer |
Base 1 tables
UserGroup
Unused columns
owner, addedDate
Notes
Users are added to each group. |
HardwareTransfer |
Base 1 tables
Hardware
Unused columns
addedDate
Notes
Base 1 only has hardware of HardwareType.SCANNER
|
HybridizationTransfer |
Base 1 tables
Hybridization
Unused columns
addedDate, hybridizationDate
Notes
Should hybridizationDate be an annotation? |
ImageFileTransfer |
Base 1 tables
Image
Unused columns
addedDate
Notes
|
LabeledExtractTransfer |
Base 1 tables
LabeledExtract
Unused columns
addedDate, quantityLeft
Notes
|
LabelTransfer |
Base 1 tables
Label
Unused columns
addedDate
Notes
|
Manager |
This class provides methods for logging, warning and stopping. |
MappedPlateTransfer |
Base 1 tables
PlateParent, Plate, PlateType
Unused columns
Plate: addedDate, wizzzard
Notes
Mapped plates are saved one at a time. |
MeasuredBioMaterialTransfer |
This method provides methods to transfer MeasuredBioMaterial from base 1 to
BASE 2. |
Migrater |
Migrates data from BASE 1 to BASE 2. |
NewsTransfer |
Base 1 tables
News
Unused columns
owner
Notes
All news items will be owned by root. |
PlateEventTransfer |
Base 1 tables
PlateEvent
|
PlateEventTypeTransfer |
This class provides methods for transferring PlateEventType data from base 1
to BASE 2. |
PlateTypeTransfer |
This class provides methods to transfer PlateType data from base 1 to BASE 2. |
PluginTransfer |
Transfers BASE 1 plugins. |
ProgressThread |
This class provides methods for displaying the progress of a transfer. |
ProtocolTransfer |
This class provides methods to transfer Protocol data from base 1 to BASE 2. |
ProtocolTypeTransfer |
Transfers protocol types that do not exist in BASE 2. |
QuotaTransfer |
|
RawBioAssayDataTransfer |
This class provides methods for transferring RawBioAssay and RawBioAssayData
from base 1 to BASE 2. |
RawBioAssayTransfer |
This class provides methods for transferring RawBioAssay and RawBioAssayData
from base 1 to BASE 2. |
ReporterProxy |
This is a proxys for the ReporterData class, which only contains the
ID. |
ReporterTransfer |
This class provides methods for transferring reporter data from base 1 to
BASE 2. |
RoleTransfer |
This class provides methods to transfer Roles from base 1 to BASE 2. |
RoleTransfer.ItemPermission |
|
SampleTissueTransfer |
This class provides methods for transferring SampleTissue data from base 1 to
BASE 2. |
SampleTransfer |
This class provides methods for transferring Sample data from base 1 to BASE
2. |
ScanTransfer |
This class provides methods for transferring ScanTransfer from base 1 to BASE
2. |
SharedItemTransfer |
This class provides methods to change owner and permissions for SharedItems. |
SoftwareTransfer |
This class provides methods to transfer Software data from base 1 to BASE 2. |
Transfer |
Extend this class when transferring data from base 1 to BASE 2. |
UnmappedPlateTransfer |
This class provides methods for transferring Unmapped plate data from base 1
to BASE 2. |
UploadFileTransfer |
All files are migrated in one go. |
UserTransfer |
Base 1 tables
UserGroup, UserGroupParent, UserAccount
Unused columns
UserGroup: owner, addedDate UserAccount:
lastExperiment, lastExploreSet, lastPlateType, lastPlateTypeCreated,
defaultGid, defaultGroupAccess, defaultWorldAccess UserGroupParent:
isReviewer
|
WellTransfer |
Transfers well annotations for all previously transferred plates. |
WizzzardTransfer |
Base 1 tables
Wizzard, Plate, RawBioAssay
Unused columns
addedDate
Notes
A Wizzzard is a PluginConfiguration in BASE 2
|
WrappedDataItem<E extends BasicData> |
|
WrappedItem<E extends BasicItem> |
|