2.8.0: 2008-09-08

Package net.sf.basedb.clients.migrate

Class Summary
AnnotationTransfer Base 1 tables SampleAnnotation
AnnotationTypeTransfer Base 1 tables SampleAnnotationType Unused columns addedDate Notes Enumerated annotations are all of Type.STRING.
ArrayBatchTransfer Base 1 tables ArrayBatch Unused columns addedDate, printStartDate, printEndDate Notes ArrayType is named ArrayDesign in BASE 2.
ArrayBlockTransfer Base 1 tables ArrayBlock Unused columns featureDiameter Notes ArrayType is named ArrayDesign in BASE 2.
ArraySlideTransfer Base 1 tables UserGroup Unused columns addedDate, hybridization Notes Barcodes for slides are not available in base 1.
ArrayTypePlateTransfer Base 1 tables ArrayTypePlate Notes Plates associated with non existing ArrayType's will not be migrated, these are considered bad entries.
ArrayTypeTransfer Base 1 tables ArrayType Unused columns addedDate, platform, protocol, printed, printMapName, featureLock, featureCount, blankFeatures Notes ArrayType is named ArrayDesign in BASE 2.
CommonItemTransfer Common items have a specific set of columns in Base 1.
ExperimentTransfer Base 1 tables Experiment, ExperimentRawBioAssay Unused columns Experiment: addedDate, channels, hasMageml, extraColumnTables, diskUsage Notes
ExtractTransfer Base 1 tables Extract Unused columns addedDate
FileTransfer This class provides methods to transfer base 1 items that correspond to the File object in BASE 2.
GroupTransfer Base 1 tables UserGroup Unused columns owner, addedDate Notes Users are added to each group.
HardwareTransfer Base 1 tables Hardware Unused columns addedDate Notes Base 1 only has hardware of HardwareType.SCANNER
HybridizationTransfer Base 1 tables Hybridization Unused columns addedDate, hybridizationDate Notes Should hybridizationDate be an annotation?
ImageFileTransfer Base 1 tables Image Unused columns addedDate Notes
LabeledExtractTransfer Base 1 tables LabeledExtract Unused columns addedDate, quantityLeft Notes
LabelTransfer Base 1 tables Label Unused columns addedDate Notes
Manager This class provides methods for logging, warning and stopping.
MappedPlateTransfer Base 1 tables PlateParent, Plate, PlateType Unused columns Plate: addedDate, wizzzard Notes Mapped plates are saved one at a time.
MeasuredBioMaterialTransfer This method provides methods to transfer MeasuredBioMaterial from base 1 to BASE 2.
Migrater Migrates data from BASE 1 to BASE 2.
NewsTransfer Base 1 tables News Unused columns owner Notes All news items will be owned by root.
PlateEventTransfer Base 1 tables PlateEvent
PlateEventTypeTransfer This class provides methods for transferring PlateEventType data from base 1 to BASE 2.
PlateTypeTransfer This class provides methods to transfer PlateType data from base 1 to BASE 2.
PluginTransfer Transfers BASE 1 plugins.
ProgressThread This class provides methods for displaying the progress of a transfer.
ProtocolTransfer This class provides methods to transfer Protocol data from base 1 to BASE 2.
ProtocolTypeTransfer Transfers protocol types that do not exist in BASE 2.
QuotaTransfer  
RawBioAssayDataTransfer This class provides methods for transferring RawBioAssay and RawBioAssayData from base 1 to BASE 2.
RawBioAssayTransfer This class provides methods for transferring RawBioAssay and RawBioAssayData from base 1 to BASE 2.
ReporterProxy This is a proxys for the ReporterData class, which only contains the ID.
ReporterTransfer This class provides methods for transferring reporter data from base 1 to BASE 2.
RoleTransfer This class provides methods to transfer Roles from base 1 to BASE 2.
RoleTransfer.ItemPermission  
SampleTissueTransfer This class provides methods for transferring SampleTissue data from base 1 to BASE 2.
SampleTransfer This class provides methods for transferring Sample data from base 1 to BASE 2.
ScanTransfer This class provides methods for transferring ScanTransfer from base 1 to BASE 2.
SharedItemTransfer This class provides methods to change owner and permissions for SharedItems.
SoftwareTransfer This class provides methods to transfer Software data from base 1 to BASE 2.
Transfer Extend this class when transferring data from base 1 to BASE 2.
UnmappedPlateTransfer This class provides methods for transferring Unmapped plate data from base 1 to BASE 2.
UploadFileTransfer All files are migrated in one go.
UserTransfer Base 1 tables UserGroup, UserGroupParent, UserAccount Unused columns UserGroup: owner, addedDate
UserAccount: lastExperiment, lastExploreSet, lastPlateType, lastPlateTypeCreated, defaultGid, defaultGroupAccess, defaultWorldAccess
UserGroupParent: isReviewer
WellTransfer Transfers well annotations for all previously transferred plates.
WizzzardTransfer Base 1 tables Wizzard, Plate, RawBioAssay Unused columns addedDate Notes A Wizzzard is a PluginConfiguration in BASE 2
WrappedDataItem<E extends BasicData>  
WrappedItem<E extends BasicItem>  
 


2.8.0: 2008-09-08