net.sf.basedb.core
Interfaces 
AbsoluteProgressReporter
AccessControlled
Annotatable
AnnotatableProxy
Batcher
Controlled
DiskConsumable
FileAttachable
FileStoreEnabled
Identifiable
Metadata.PropertyPath
Nameable
Ownable
ProgressReporter
QueryExecutor.Cancelable
QueryRuntimeFilter
Registered
Removable
SecondaryStorageController
Shareable
SystemItem
Transactional
Validatable
Classes 
AbstractBatcher
AbstractEntityQuery
AbstractHqlQuery
AbstractQuery
AbstractResultList
AbstractSqlQuery
Affymetrix
AnnotatedItem
Annotation
Annotation.QueryRuntimeFilterImpl
AnnotationBetweenRestriction
AnnotationInRestriction
AnnotationRestriction
AnnotationSet
AnnotationSet.QueryRuntimeFilterImpl
AnnotationSimpleRestriction
AnnotationType
AnnotationTypeCategory
AnyToAny
Application
Application.DbCleaner
Application.Pinger
Application.SecondaryStorageControllerTask
Application.SessionControlCacheCleaner
ArrayBatch
ArrayDesign
ArrayDesignBlock
ArrayDesignPlate
ArraySlide
BasicBatcher
BasicChildItem
BasicItem
BatchedPropertyInfo
BatchUtil
BioAssay
BioAssaySet
BioMaterial
BioMaterialEvent
BioMaterialList
BioPlate
BioPlateType
BioSource
BioWell
BlockInfo
BooleanParameterType
ChangeHistory
ChildItem
Client
ClientDefaultSetting
Coloring
CommonItem
Config
ContextKey
DataCube
DataCube.RawMappingQuery
DataCubeColumn
DataCubeExtraValue
DataCubeFilter
DataCubeLayer
DataFileType
DataQuery
DataResultIterator
DateParameterType
DateUtil
DbControl
DbControl.SaveIf
Directory
DiskUsage
DiskUsageStatistics
DoubleParameterType
DynamicExtraValueQuery
DynamicJoin
DynamicPositionQuery
DynamicPositionQueryJoiners
DynamicPositionQueryJoiners.ExtraValueJoiner
DynamicPositionQueryJoiners.ReporterJoiner
DynamicQuery
DynamicRawDataQuery
DynamicReporterQuery
DynamicRestriction
DynamicResultIterator
DynamicSpotQuery
DynamicSpotQueryJoiners
DynamicSpotQueryJoiners.ExtraValueJoiner
DynamicSpotQueryJoiners.RawDataJoiner
DynamicSpotQueryJoiners.ReporterJoiner
DynamicSpotQueryJoiners.ReporterListJoiner
Experiment
ExtendedProperties
ExtendedProperty
ExtendedPropertyAccessor
ExtendedPropertyAccessor.GetterSetter
ExtendedPropertyLinker
Extract
ExtraValue
ExtraValueExpression
ExtraValueJoin
ExtraValueType
Feature
FeatureBatcher
FeatureCoordinate
File
FileParameterType
FileServer
FileSet
FileSet.DataFileHandlerWrapper
FileSet.QueryRuntimeFilterImpl
FileSetMember
FileSetMember.QueryRuntimeFilterImpl
FileStoreUtil
FileType
FilterBatcher
FloatParameterType
Formula
GlobalDefaultSetting
Group
Group.QueryRuntimeFilterImpl
GroupPermissions
Hardware
HardwareType
HasAnnotationRestriction
Help
HibernateUtil
HqlQueryJoiners
HqlQueryJoiners.ReporterListJoiner
Hybridization
Image
Install
Install.PlatformFT
IntegerParameterType
IntegerUtil
IntensityFormula
InternalJobQueue
InternalJobQueue.JobQueueKeyring
InternalStorageController
InternalStorageController.StorageKeyring
Item.DefinedPermissions
ItemContext
ItemContext.PropertyFilterPair
ItemKey
ItemParameterType
ItemProxy
ItemQuery
ItemResultIterator
ItemResultList
Job
Job.ProgressReporterImpl
JobAgent
JobAgentSettings
Key
Keyring
Label
LabeledExtract
LogControl
LogUtil
LongParameterType
MappingBatcher
MeanRawDataPropertyExpression
MeasuredBioMaterial
Message
Metadata
Metadata.BasicData2ItemPropertyPath
Metadata.BasicItem2DataPropertyPath
Metadata.CollectionPropertyPath
Metadata.CombinedPropertyPath
Metadata.ComponentPropertyPath
Metadata.DateCopyPropertyPath
Metadata.EntityPropertyPath
Metadata.EvictPropertyPath
Metadata.IdentifierPropertyPath
Metadata.MapPropertyPath
Metadata.NoopPropertyPath
Metadata.ReporterScore2DataPropertyPath
MimeType
MultiPermissions
NameableUtil
News
News.QueryRuntimeFilterImpl
OwnableUtil
OwnedItem
ParameterInfo
ParameterType
ParameterValuesImpl
Path
PathParameterType
PermissionTemplate
Plate
PlateEvent
PlateEventType
PlateGeometry
PlateMapping
PlateType
Platform
PlatformFileType
PlatformVariant
PluginConfiguration
PluginConfigurationRequest
PluginDefinition
PluginExecutionRequest
PluginParameter
PluginPermission
PluginRequest
PluginResponse
PluginSessionControl
PluginType
PositionBatcher
PositionExtraValueBatcher
PredefinedQuery
Presets
Presets.Preset
Project
Project.QueryRuntimeFilterImpl
ProjectKey
ProjectPermissions
PropertyFilter
Protocol
ProtocolType
Quantity
QueryExecutor
QueryExecutor.CancelableSession
QueryExecutor.CancelableStatelessSession
QueryExecutor.CancelableStatement
QueryExecutor.FutureItem
QueryExecutor.FutureResultSet
QueryExecutor.FutureScrollIterator
QueryExecutor.FutureUpdate
QueryRuntimeFilterFactory
QueryRuntimeFilterFactory.AnnotatableFilter
QueryRuntimeFilterFactory.BasicFilter
QueryRuntimeFilterFactory.ChainedFilter
QueryRuntimeFilterFactory.ChildFilter
QueryRuntimeFilterFactory.DenyAllFilter
QueryRuntimeFilterFactory.OwnableFilter
QueryRuntimeFilterFactory.RemovableFilter
QueryRuntimeFilterFactory.ShareableFilter
QueryRuntimeFilterManager
Quota
Quota.QueryRuntimeFilterImpl
QuotaType
RawBioAssay
RawDataBatcher
RawDataProperty
RawDataPropertyExpression
RawDataType
RawDataTypes
RawDataUtil
RealJoin
RealTable
Reporter
ReporterBatcher
ReporterList
ReporterListJoin
ReporterPropertyExpression
ReporterScore
ReporterScoreQuery
ReporterScoreResultIterator
ReporterType
RequestInformation
Role
Role.QueryRuntimeFilterImpl
RoleKey
Sample
Scan
ScrollIterator
Session
SessionControl
SessionControl.LoginInfo
SessionControl.SettingInfo
Setting
ShareableUtil
SharedItem
SimpleAbsoluteProgressReporter
SimpleProgressReporter
Software
SoftwareType
SpotBatcher
SpotExtraValueBatcher
SpotImage
SpotImages
StringParameterType
StringUtil
SystemItems
TimestampParameterType
Transformation
Trashcan
Unit
UnmodifiableResultList
Update
User
User.QueryRuntimeFilterImpl
UserClientSetting
UserDefaultSetting
UserPermissions
Values
Version
VirtualColumn
VirtualDb
Well
Enums 
BioMaterialEvent.Type
BioWell.LockMode
ExtraValue.CoordinateType
FeatureIdentificationMethod
File.Action
Formula.AverageMethod
Formula.Parser
Formula.Type
Image.Format
Include
IntensityTransform
Item
ItemContext.SortDirection
Job.ExecutionTime
Job.Status
Job.Type
Location
Operator
Path.Type
Permission
Project.Default
Transactional.Action
Type
VirtualTable
Exceptions 
AccountExpiredException
AlreadyLoggedInException
BaseException
ConfigurationException
ConnectionClosedException
DatabaseException
DateFormatException
DetachedItemException
DisallowedValueException
InvalidAnnotationException
InvalidDataException
InvalidPasswordException
InvalidPathException
InvalidRelationException
InvalidUseOfNullException
ItemAlreadyExistsException
ItemInUseException
ItemModifiedException
ItemNotFoundException
NotLoggedInException
NumberOutOfRangeException
ParameterException
PermissionDeniedException
QuotaException
StringTooLongException
UnsavedItemException
UnsupportedFileFormatException