One of the new features of BASE 2 is that it keeps track of all links back to the raw data for each spot in a bioassayset. In BASE 1 this the link was limited to one raw data for each spot. When doing a merge of spots having, for example, the same reporter it was impossible to keep the link to all raw data that spot was calculated from. You could choose to link to one of the spots or to none at all. With BASE 2 it is possible to keep all the links but it creates some other problems which must be solved:
It is actually more or less the same problem. How do we select a raw data value when there is many to choose from? Should we always average or do we need other options (max, min, sum, count, etc)?
ContentsThis test procedure sets up an experiment with some merged data. After that it is expected that the web interface is used for trying out various ideas and testing that the desired functionality is working correctly.
This test doesn't need any data files.
To run the test do the following:
ant main test
.build/test/
directory../test.sh merge <cmds>
where
<cmds>
is one or more of the following:
all
: run all testssetup
: run the test that creates the data that is needed