2.14.2: 2010-02-22

net.sf.basedb.clients.migrate
Class ExperimentTransfer

java.lang.Object
  extended by net.sf.basedb.clients.migrate.Manager
      extended by net.sf.basedb.clients.migrate.Transfer
          extended by net.sf.basedb.clients.migrate.SharedItemTransfer
              extended by net.sf.basedb.clients.migrate.CommonItemTransfer
                  extended by net.sf.basedb.clients.migrate.ExperimentTransfer

public class ExperimentTransfer
extends CommonItemTransfer

Base 1 tables
Experiment, ExperimentRawBioAssay
Unused columns
Experiment: addedDate, channels, hasMageml, extraColumnTables, diskUsage
Notes

Version:
2.0
Author:
Gregory
Last modified
$Date: 2009-04-06 14:52:39 +0200 (Mon, 06 Apr 2009) $

Field Summary
private static Logger log
          Logger for this class
(package private)  RawBioAssayTransfer rbaT
           
 
Fields inherited from class net.sf.basedb.clients.migrate.CommonItemTransfer
DESCRIPTION, NAME, REMOVED
 
Fields inherited from class net.sf.basedb.clients.migrate.SharedItemTransfer
GID, GROUP_ACCESS, groupT, ID, OWNER, userT, WORLD_ACCESS
 
Fields inherited from class net.sf.basedb.clients.migrate.Transfer
BASE2, FROM, itemList, LIMIT, LOCAL_MYSQL_TRANSFER, mapIds, progress, properties, QUICK_TRANSFER, selectOffset, sessionControl, TO
 
Constructor Summary
ExperimentTransfer(UserTransfer userT, GroupTransfer groupT, RawBioAssayTransfer rbaT)
           
 
Method Summary
private  void addRawBioAssays(DbControl dc, Experiment experiment, int experimentId)
           
protected  Experiment createItem(DbControl dc, ResultSet rs)
          Creates a Experiment from the current position in ResultSet.
 void start()
          Starts the actual transfer.
 
Methods inherited from class net.sf.basedb.clients.migrate.CommonItemTransfer
setCommonItemData
 
Methods inherited from class net.sf.basedb.clients.migrate.SharedItemTransfer
chmod, chown, getOwner, setSharedItemData
 
Methods inherited from class net.sf.basedb.clients.migrate.Transfer
cleanUpMemory, commit, createItem, dependencyFailure, done, getBase2Id, getBatchSize, getCount, getDependencyStatus, getIdMap, getInt, getProperty, initIdMap, isDone, mapId, newDbControl, readRestorePointData, run, run, runUnBatched, saveItem, setup, startProgress, writeRestorePointData
 
Methods inherited from class net.sf.basedb.clients.migrate.Manager
getPreparedStatements, prepareStatementFromFile, print, printDate, setPreparedStatements, stop
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

rbaT

RawBioAssayTransfer rbaT

log

private static final Logger log
Logger for this class

Constructor Detail

ExperimentTransfer

ExperimentTransfer(UserTransfer userT,
                   GroupTransfer groupT,
                   RawBioAssayTransfer rbaT)
Parameters:
userT - A finished UserTransfer
groupT - A finished GroupTransfer
Method Detail

start

public void start()
Description copied from class: Transfer
Starts the actual transfer.

Specified by:
start in class Transfer

createItem

protected Experiment createItem(DbControl dc,
                                ResultSet rs)
                         throws BaseException,
                                SQLException
Creates a Experiment from the current position in ResultSet.

Overrides:
createItem in class Transfer
Parameters:
dc - DbControl used to transfer this item
rs - ResultSet containing the data for this item.
Returns:
Label
Throws:
BaseException
SQLException - If current ResultSet position is invalid or number of columns in the select statement is to low.

addRawBioAssays

private void addRawBioAssays(DbControl dc,
                             Experiment experiment,
                             int experimentId)

2.14.2: 2010-02-22