AuthenticationManager
AuthenticatedUser
BioSourceToSampleTransformer
SampleToChildSampleTransformer
ExtractToChildExtractTransformer
ExtractToSampleTransformer
PhysicalBioAssayImporter
ExtractImporter
ExtractToParentExtractTransformer
SampleToParentSampleTransformer
SampleToBioSourceTransformer
SampleToExtractTransformer
DerivedBioAssayImporter
AnnotationBetweenRestriction
ItemContext.configureQuery(DbControl, SqlQuery, List)
ListableUtil.getTransformerFactory(Item)
SourceItemTransformerFactory.create(Item, net.sf.basedb.core.SyncFilter.SourceItemTransform)
AnnotationSimpleRestriction
AnnotationSet.getInheritedAnnotations()
AnnotationSnapshot.getThisAnnotation(DbControl)
AnnotationSnapshot.getInheritedAnnotation(DbControl)
AnnotationSnapshot.getThisAnnotationId()
AnnotationSnapshot.getInheritedAnnotationId()
AnnotationSet.getAnnotations(net.sf.basedb.core.Annotation.Source)
AnnotationSnapshot.getThisAnnotationSet(DbControl)
AnnotationSnapshot.getInheritedAnnotationSet(DbControl)
AnnotationSnapshot.getThisAnnotationSetId()
AnnotationSnapshot.getInheritedAnnotationSetId()
VirtualTable.getBytesPerRow(Experiment)
VirtualTable.getBytesPerRow(VirtualDb)
VirtualTable.getColumns(VirtualDb)
VirtualTable.getColumns(Experiment)
Annotation.getInheritedFrom()
AnnotationSnapshot.getThisItem(DbControl)
AnnotationSnapshot.getInheritedFrom()
AnnotationSnapshot.getThisItemId()
AnnotationSnapshot.getThisItemType()
ValidationOptions.getOption(ValidationRuleAction, String, String)
DerivedBioAssay.getParents()
DerivedBioAssay.getPhysicalBioAssays()
Item.getQuery()
ValidationOptions.getSeverity(ValidationRuleAction)
AnnotationSnapshot.getThisUnit(DbControl)
AnnotationSnapshot.getActualUnit(DbControl)
AnnotationSnapshot.getThisUnitId()
OverviewUtil.getStaticRules()
OverviewUtil.getAllRules(DbControl, GenericOverview)
AnnotationSnapshot.getActualValues()
AnnotationSnapshot.getThisValues()
AnnotationSnapshot.getActualValues(UnitConverter, Type)
AnnotationSet.hasAnnotation(AnnotationType, net.sf.basedb.core.Annotation.Source)
AnnotationInRestriction
AnnotationSet.inheritAnnotation(Annotation, boolean)
#inheritAll(AnnotationSet)
AnnotationSnapshot.getSource()
SessionControl.login(LoginRequest)
Registry.registerExtension(Extension, ClassLoader)
Registry.registerExtensionPoint(ExtensionPoint, ClassLoader)
AnnotationSet.removeAllInherited(AnnotationSet)
ValidationOptions.setOption(ValidationRuleAction, String, String)
ValidationOptions.setSeverity(ValidationRuleAction, Severity)
EntityDetails.toChangeDetails(Item, int, String, ChangeType, boolean, boolean)
EntityDetails.toChangeDetails(boolean, boolean)
JarClassLoader.newInstance(String)
JarClassLoader.getInstance(String, boolean)
AnnotationBetweenRestriction.AnnotationBetweenRestriction(String, AnnotationType, Object, Object, boolean, boolean)
AnnotationBetweenRestriction.AnnotationBetweenRestriction(String, int, Type, Object, Object, boolean, boolean)
AnnotationInRestriction.AnnotationInRestriction(String, AnnotationType, boolean, boolean, Object...)
AnnotationSimpleRestriction.AnnotationSimpleRestriction(String, AnnotationType, Operator, Object, boolean, boolean)
AnnotationSimpleRestriction.AnnotationSimpleRestriction(String, int, Type, Operator, List, boolean, boolean)
AnnotationSimpleRestriction.AnnotationSimpleRestriction(String, int, Type, Operator, Object, boolean, boolean)
HasAnnotationRestriction.HasAnnotationRestriction(String, AnnotationType, boolean, boolean, boolean)
HasAnnotationRestriction.HasAnnotationRestriction(String, int, boolean, boolean, boolean)