@Deprecated public class RawBioAssayClient extends AbstractRPCClient
RawBioAssayService
Modifier and Type | Field and Description |
---|---|
private SessionClient |
session
Deprecated.
|
Constructor and Description |
---|
RawBioAssayClient(SessionClient session)
Deprecated.
Creates a new object for a session.
|
Modifier and Type | Method and Description |
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InputStream |
downloadRawDataByType(int rawBioAssayId,
String dataFileType)
Deprecated.
Gets RawData as a file for a rawbioassay if it is stored in a file
in BASE.
|
AnnotationInfo[] |
getAnnotationValues(int rawBioAssayId,
Integer[] annotationTypes,
boolean findInherited)
Deprecated.
Get annotation values for one or more annotation types.
|
ArrayDesignInfo |
getArrayDesign(int rawBioAssayId)
Deprecated.
Returns information about the array design used in a rawbioassay
|
RawBioAssayInfo |
getById(int itemId)
Deprecated.
Get info about a raw bioassay when you know the ID.
|
FileSetMemberInfo[] |
getDataFiles(int rawBioAssayId,
QueryOptions qOpt)
Deprecated.
Returns information about data files that are used storing
raw data for a raw bioassay.
|
DataFileTypeInfo[] |
getDataFileTypes(int rawBioAssayId,
QueryOptions qOpt)
Deprecated.
Returns information about data file types that are used storing
raw data for a raw bioassay.
|
RawBioAssayInfo[] |
getRawBioAssays(QueryOptions qOpt)
Deprecated.
Gets info about raw bioassays that are available in the logged in session.
|
Boolean |
hasDownloadableData(int rawBioAssayId)
Deprecated.
Returns if a rawbioassay has raw data that can be downloaded or not.
|
getOperation, getService, getServiceFactory, invokeBlocking, invokeBlocking, invokeBlocking, invokeFileBlocking, setServiceFactory
private SessionClient session
public RawBioAssayClient(SessionClient session)
session
- public RawBioAssayInfo getById(int itemId) throws org.apache.axis2.AxisFault
itemId
- The ID of the raw bioassayorg.apache.axis2.AxisFault
- If communication with web service fails.public RawBioAssayInfo[] getRawBioAssays(QueryOptions qOpt) throws org.apache.axis2.AxisFault
qOpt
- Options to put on the queryorg.apache.axis2.AxisFault
- If communication with web service fails.public ArrayDesignInfo getArrayDesign(int rawBioAssayId) throws org.apache.axis2.AxisFault
rawBioAssayId
- RawBioAssay to get the array design for.org.apache.axis2.AxisFault
- If communication with the webservice fails.public InputStream downloadRawDataByType(int rawBioAssayId, String dataFileType) throws org.apache.axis2.AxisFault, IOException
rawBioAssayId
- Id of rawbioassay to get raw data fromdataFileType
- The external ID of the data file type to downloadorg.apache.axis2.AxisFault
- If communication with webservices fails.IOException
- If writing to the target file fails.public Boolean hasDownloadableData(int rawBioAssayId) throws org.apache.axis2.AxisFault
rawBioAssayId
- Id of the RawBioAssay it concerns.org.apache.axis2.AxisFault
- If the communication with the webservice fails.public DataFileTypeInfo[] getDataFileTypes(int rawBioAssayId, QueryOptions qOpt) throws org.apache.axis2.AxisFault
rawBioAssayId
- Id of the raw bioassay to get the information about.qOpt
- Restrictions and includes to put on the query when getting the information.org.apache.axis2.AxisFault
- If communication with webservice fails.public FileSetMemberInfo[] getDataFiles(int rawBioAssayId, QueryOptions qOpt) throws org.apache.axis2.AxisFault
rawBioAssayId
- Id of the raw bioassay to get the information about.qOpt
- Restrictions and includes to put on the query when getting the information.org.apache.axis2.AxisFault
- If communication with webservice fails.public AnnotationInfo[] getAnnotationValues(int rawBioAssayId, Integer[] annotationTypes, boolean findInherited) throws org.apache.axis2.AxisFault
rawBioAssayId
- Id of the raw bioassay to load the annotations fromannotationTypes
- Array with the ID:s of the annotation typesfindInherited
- TRUE to look among inherited annotations, FALSE to only
look among primary annotationsorg.apache.axis2.AxisFault