Deprecated Methods |
net.sf.basedb.core.ItemContext.configureQuery(DbControl, AbstractSqlQuery, List)
In 3.1, use ItemContext.configureQuery(DbControl, SqlQuery, List) instead |
net.sf.basedb.core.hibernate.SessionWrapper.connection()
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net.sf.basedb.core.hibernate.SessionWrapper.get(Class, Serializable, LockMode)
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net.sf.basedb.core.hibernate.SessionWrapper.get(String, Serializable, LockMode)
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net.sf.basedb.core.VirtualTable.getBytesPerRow(RawDataType)
In 3.1, use VirtualTable.getBytesPerRow(Experiment)
or VirtualTable.getBytesPerRow(VirtualDb) instead |
net.sf.basedb.core.VirtualTable.getColumns(RawDataType)
In 3.1, use VirtualTable.getColumns(VirtualDb) or
VirtualTable.getColumns(Experiment) instead |
net.sf.basedb.util.overview.ValidationOptions.getOption(Validator, String, String)
In 3.2, use ValidationOptions.getOption(ValidationRuleAction, String, String) instead |
net.sf.basedb.core.DerivedBioAssay.getParent()
In 3.2, replaced with DerivedBioAssay.getParents() |
net.sf.basedb.core.DerivedBioAssay.getPhysicalBioAssay()
In 3.2, replaced with DerivedBioAssay.getPhysicalBioAssays() . |
net.sf.basedb.util.overview.ValidationOptions.getSeverity(Validator)
In 3.2, use ValidationOptions.getSeverity(ValidationRuleAction) instead |
net.sf.basedb.util.overview.OverviewUtil.getValidators()
In 3.2, use OverviewUtil.getStaticRules() or #getAllRules(DbControl, BasicItem) instead |
net.sf.basedb.core.hibernate.SessionWrapper.load(Class, Serializable, LockMode)
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net.sf.basedb.core.hibernate.SessionWrapper.load(String, Serializable, LockMode)
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net.sf.basedb.core.hibernate.SessionWrapper.lock(Object, LockMode)
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net.sf.basedb.core.hibernate.SessionWrapper.lock(String, Object, LockMode)
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net.sf.basedb.core.hibernate.SessionWrapper.reconnect()
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net.sf.basedb.core.hibernate.SessionWrapper.refresh(Object, LockMode)
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net.sf.basedb.util.extensions.Registry.registerExtension(Extension)
In 3.2, use Registry.registerExtension(Extension, ClassLoader) instead |
net.sf.basedb.util.extensions.Registry.registerExtensionPoint(ExtensionPoint)
In 3.2, use Registry.registerExtensionPoint(ExtensionPoint, ClassLoader) instead |
net.sf.basedb.util.extensions.manager.processor.ExtractResourcesProcessor.setForceOverwrite(boolean)
In 3.1, no replacement since all files must be overwritten to ensure
proper functionality |
net.sf.basedb.util.overview.ValidationOptions.setOption(Validator, String, String)
In 3.2, use ValidationOptions.setOption(ValidationRuleAction, String, String) instead |
net.sf.basedb.util.overview.ValidationOptions.setSeverity(Validator, Severity)
In 3.2, use ValidationOptions.setSeverity(ValidationRuleAction, Severity) instead |