Package net.sf.basedb.core.data
Class TransformationData
- java.lang.Object
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- net.sf.basedb.core.data.BasicData
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- net.sf.basedb.core.data.TransformationData
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- All Implemented Interfaces:
IdentifiableData
,NameableData
,RemovableData
public class TransformationData extends BasicData implements NameableData, RemovableData
This class holds information about a transformation.- Version:
- 2.0
- Author:
- Nicklas
- See Also:
Transformation
, Developer documentation: Experiments and analysis- Last modified
- $Date: 2015-11-17 13:57:57 +0100 (ti, 17 nov 2015) $
- Hibernate: class
- table="`Transformations`" lazy="true"
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Field Summary
Fields Modifier and Type Field Description private String
description
private ExperimentData
experiment
private JobData
job
private String
name
private Set<BioAssaySetData>
products
private Set<RawBioAssayData>
rawSources
private Integer
removedBy
private BioAssaySetData
source
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Fields inherited from interface net.sf.basedb.core.data.NameableData
MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH
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Constructor Summary
Constructors Constructor Description TransformationData()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getDescription()
Get the description for the item.ExperimentData
getExperiment()
Get the experiment this bioassayset belongs to.JobData
getJob()
Get the job that was used to execute this transformationString
getName()
Get the name of the item.(package private) Set<BioAssaySetData>
getProducts()
This is the inverse end.Set<RawBioAssayData>
getRawSources()
Get the source raw bioassays for the transformation.Integer
getRemovedBy()
Get the ID of the user that removed this item.BioAssaySetData
getSource()
Get the source bioassayset for the transformation.void
setDescription(String description)
Set the description for the item.void
setExperiment(ExperimentData experiment)
void
setJob(JobData job)
void
setName(String name)
Set the name of the item.(package private) void
setProducts(Set<BioAssaySetData> products)
(package private) void
setRawSources(Set<RawBioAssayData> rawSources)
void
setRemovedBy(Integer removedBy)
Set the ID of the user that removed this item or null to restore the item.void
setSource(BioAssaySetData source)
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Methods inherited from class net.sf.basedb.core.data.BasicData
equals, getId, getVersion, hashCode, setId, setVersion, toString
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Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
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Methods inherited from interface net.sf.basedb.core.data.IdentifiableData
getId, getVersion
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Field Detail
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name
private String name
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description
private String description
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removedBy
private Integer removedBy
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experiment
private ExperimentData experiment
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source
private BioAssaySetData source
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job
private JobData job
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rawSources
private Set<RawBioAssayData> rawSources
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products
private Set<BioAssaySetData> products
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Method Detail
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getName
public String getName()
Description copied from interface:NameableData
Get the name of the item.- Specified by:
getName
in interfaceNameableData
- Returns:
- A
String
with the name of the item
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setName
public void setName(String name)
Description copied from interface:NameableData
Set the name of the item. The name cannot be null and mustn't be longer than the value specified by theMAX_NAME_LENGTH
constant.- Specified by:
setName
in interfaceNameableData
- Parameters:
name
- The new name for the item
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getDescription
public String getDescription()
Description copied from interface:NameableData
Get the description for the item.- Specified by:
getDescription
in interfaceNameableData
- Returns:
- A
String
with a description of the item
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setDescription
public void setDescription(String description)
Description copied from interface:NameableData
Set the description for the item. The description can be null but mustn't be longer than the value specified by theMAX_DESCRIPTION_LENGTH
constant.- Specified by:
setDescription
in interfaceNameableData
- Parameters:
description
- The new description for the item
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getRemovedBy
public Integer getRemovedBy()
Description copied from interface:RemovableData
Get the ID of the user that removed this item.- Specified by:
getRemovedBy
in interfaceRemovableData
- Returns:
- The ID of a user or null if the item is not removed
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setRemovedBy
public void setRemovedBy(Integer removedBy)
Description copied from interface:RemovableData
Set the ID of the user that removed this item or null to restore the item.- Specified by:
setRemovedBy
in interfaceRemovableData
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getExperiment
public ExperimentData getExperiment()
Get the experiment this bioassayset belongs to.- Hibernate: many-to-one
- column="`experiment_id`" not-null="true" outer-join="false" update="false"
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setExperiment
public void setExperiment(ExperimentData experiment)
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getSource
public BioAssaySetData getSource()
Get the source bioassayset for the transformation. Null if this is a root transformation from raw bioassays.- Hibernate: many-to-one
- column="`bioassayset_id`" not-null="false" outer-join="false" update="false"
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setSource
public void setSource(BioAssaySetData source)
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getJob
public JobData getJob()
Get the job that was used to execute this transformation- Hibernate: many-to-one
- column="`job_id`" not-null="false" outer-join="false" update="false"
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setJob
public void setJob(JobData job)
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getRawSources
public Set<RawBioAssayData> getRawSources()
Get the source raw bioassays for the transformation.- Hibernate: set
- table="`TransformationRawBioAssays`" lazy="true"
- Hibernate: collection-key
- column="`transformation_id`"
- Hibernate: collection-many-to-many
- column="`rawbioassay_id`" class="net.sf.basedb.core.data.RawBioAssayData"
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setRawSources
void setRawSources(Set<RawBioAssayData> rawSources)
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getProducts
Set<BioAssaySetData> getProducts()
This is the inverse end.- See Also:
BioAssaySetData.getTransformation()
- Hibernate: set
- lazy="true" inverse="true" cascade="delete"
- Hibernate: collection-key
- column="`transformation_id`"
- Hibernate: collection-one-to-many
- class="net.sf.basedb.core.data.BioAssaySetData"
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setProducts
void setProducts(Set<BioAssaySetData> products)
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