BaseFileImporter |
Imports spot data from a serial or matrix BASEfile.
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BaseFileImporter.RawDataProxy |
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BaseFileImporter.ReporterProxy |
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BaseFileInfo |
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BaseFileInfo.ChildBioAssay |
Keeps information about a new child bioassay from
the 'assays' section or 'spot' sections.
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BaseFileInfo.SpotSectionInfo |
Keeps information about headers and more in a 'spot' section.
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BfsImporter |
Imports spot data from a serial or matrix BFS.
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BfsImporter.ProgressEventHandler |
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ExtraFloatParser |
Parser that is responsible for extracting extra float values
from the 'spot' section in a BASEfile.
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FirstPassSectionSpotsParser |
Parses a 'spots' section of a BASEfile with bioassay set spot
data.
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GenericIntensityParser |
Generic spot intensity parser implementation that
looks for 'intensity1', ..., 'intensityN' data columns for any
number of channels.
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MAParser |
Spot intensity parser implementation for 2-channel data
that looks for M/A values in the spot data and converts them to ch1/ch2
intensity values.
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MatrixSpotIntensityEventHandler |
Event handler that extracts spot intensity information from matrix BFS
data files and inserts the values to a spot batcher.
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PositionEventHandler |
Event handler implementation intended to be used with a
SynchronizedSpotDataParser to extract the position
number from the parsed data.
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SecondPassSectionSpotsParser |
The second pass of the 'spots' section extracts spot and extra value
data.
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SectionAssaysParser |
Parses the 'assays' section of a BASEfile with bioassay set spot
data.
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SectionReporterListParser |
Parses the 'reporterlist' section of a BASEfile.
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SerialSpotIntensityEventHandler |
Event handler that extracts spot intensity information from serial BFS
data files and inserts the values to a spot batcher.
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SynchronizedSpotDataParser |
A parser that synchronizes the parsing of multiple underlying
data parsers and a master reporter annotations parser.
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SynchronizedSpotDataParser.SynchronizedData |
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