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About AboutBean AboutImpl AbsConverter AbsExpression AbsoluteProgressReporter AbstractAnalysisPlugin AbstractBatcher AbstractBioAssaySetExporter AbstractCustomRequestHandler AbstractDataWriterFactory AbstractDbEngine AbstractEntityQuery AbstractExporterPlugin AbstractFieldConverter AbstractFilenameGenerator AbstractFileUnpacker AbstractFlatFileImporter AbstractHqlQuery AbstractIOSupport AbstractItemImporter AbstractJepConversionFunction AbstractJspActionFactory AbstractJspFactory AbstractJspRendererFactory AbstractNodeLoader AbstractOnSaveAction AbstractPlugin AbstractQuery AbstractQueryCache AbstractResultList AbstractResultWriter AbstractRPCClient AbstractRPCService AbstractSignalHandler AbstractSignalReceiver AbstractSignalTransporter AbstractSqlQuery Accept AccessControlled AccountExpiredException Action ActionClassEventFilter ActionFactory ActionIterator AddAllTransformer AddConverter AddExpression AdvancedFieldConverter AffymetrixUtil Agent AgentController AgentSignalReceiver Aggregations AllEventsFilter AllOfFilter AllowAnyHostNameVerifyer AlreadyLoggedInException AnalysisFilterPlugin AndConverter AndRestriction Annotatable AnnotatableData AnnotatableProxy AnnotatedData AnnotatedItem AnnotatedItemInfo Annotation Annotation.QueryRuntimeFilterImpl AnnotationAssayField AnnotationBetweenRestriction AnnotationData AnnotationFilter AnnotationFlatFileImporter AnnotationFlatFileImporter.AnnotationValue AnnotationFlatFileImporter.NewAnnotations AnnotationInfo AnnotationInRestriction AnnotationLoader AnnotationLogger AnnotationModel AnnotationNameGenerator AnnotationParser AnnotationRestriction Annotations AnnotationSet AnnotationSet.QueryRuntimeFilterImpl AnnotationSetData AnnotationSetLogger AnnotationSetSnapshot AnnotationSetterPlugin AnnotationSimpleRestriction AnnotationSnapshot AnnotationType AnnotationTypeCategory AnnotationTypeCategoryData AnnotationTypeClient AnnotationTypeData AnnotationTypeFilter AnnotationTypeInfo AnnotationTypeService AnnotationUtil AnnotationUtil.AnnotatableWrapper AnnotationValidator AnnotationWriter AnyToAny AnyToAnyData AnyToAnyLoader AnyToAnyNameGenerator AnyToAnyValidator Application Application.DbCleaner Application.Pinger Application.SecondaryStorageControllerTask Application.SessionControlCacheCleaner ArrayBatch ArrayBatchData ArrayBatchImporter ArrayBatchLoader ArrayBatchValidator ArrayDesign ArrayDesignBlock ArrayDesignBlockData ArrayDesignClient ArrayDesignData ArrayDesignImporter ArrayDesignInfo ArrayDesignLoader ArrayDesignPlate ArrayDesignPlateData ArrayDesignService ArrayDesignValidator ArrayIterator ArraySlide ArraySlideData ArraySlideImporter ArraySlideLoader ArraySlideValidator AscOrder AssayField AssayPropertyField ASTConstantConverter ASTFunNodeConverter ASTVarNodeConverter AuthenticationException AuthenticationInformation Authenticator AutoChildNodeLoader AutoDetectFileFormat AutoDetectFileFormat.IsImportableFilter AutoDetectingImporter AutoJoiner Base Base1FieldConverter Base1PluginExecuter Base1PluginExecuter.Base1JobParameterType BaseException BaseFileDataSource BaseFileExporter BaseFileExporterPlugin BaseFileExporterPlugin.ExtendedDynamicField BaseFileExporterSupport BaseFileImporter BaseFileImporter.RawDataProxy BaseFileImporter.ReporterProxy BaseFileImporterSupport BaseFileInfo BaseFileInfo.ChildBioAssay BaseFileInfo.SpotSectionInfo BaseFileParser BaseFileSectionParser BaseFileWrapper BaseFileWriter BaseInputStreamLocator BasicBatcher BasicChildItem BasicData BasicItem BasicItemFilter BasicItemInfo BasicItemNodeLoader BasicItemNodeLoaderFactory BasicItemNodeValidatorFactory BasicItemToIdTransformer BasicNodeValidator BatchableData BatchedPropertyInfo Batcher BatchUtil BCrypt BeanActionFactory BetweenRestriction BfsExporter BfsExporterPlugin BfsExporterPlugin.ExtendedExportableField BfsExporterSupport BfsImporter BfsImporter.ProgressEventHandler BfsImporterSupport BfsParser BioAssay BioAssayData BioAssayExperimentalFactorLoader BioAssaySet BioAssaySetClient BioAssaySetData BioAssaySetFilterUtil BioAssaySetInfo BioAssaySetService BioAssaySetUtil BioMaterial BioMaterialData BioMaterialEvent BioMaterialEvent.Type BioMaterialEventData BioMaterialEventLogger BioMaterialEventSource BioMaterialEventSource.BioMaterialEventSourceTransformer BioMaterialEventSourceData BioMaterialEventSourceFormatter BioMaterialList BioMaterialListData BioPlate BioPlateData BioPlateEvent BioPlateEventData BioPlateEventParticipant BioPlateEventParticipantData BioPlateEventType BioPlateEventTypeData BioPlateImporter BioPlateType BioPlateTypeData BioSource BioSourceData BioSourceImporter BioSourceLoader BioSourceToSampleTransformer BioSourceValidator BioWell BioWell.LockMode BioWellData BlockInfo Body BooleanExpression BooleanFormatter BooleanFormatter.Type BooleanParameterType BooleanParameterValueData BooleanWriter Bundle Button Button ButtonAction ButtonBean ButtonGroup ByteArrayWriter Bzip2FilePacker CacheControlFilter CaseExpression CdfFileReporterImporter CdfValidationAction CdfValidationFactory CdfValidator Cell CellValue CelValidationAction CelValidationFactory CelValidator ChainedProgressReporter ChangeHistory ChangeHistoryData ChangeHistoryDetailData ChangeHistoryUtil ChangeType ChannelFunction CharacterEncodingFilter ChildItem ChildNodeDirection ChildrenTransformer ClassLocal ClassMapErrorHandler ClassUtil Client ClientContext ClientData ClientDefaultSetting ClientDefaultSettingData ClonableProperty ClonableReporterQuery CloneReportersPlugin CloseResourceInputStream CmdLine ColFunction CollectionTransformer ColorFormatter ColorGenerator Coloring ColoringData ColumnDef ColumnHeaders ColumnMapper CombiningEventFilter CommonData CommonItem CommonItemInfo CompactButtonRenderer CompactButtonRendererFactory ComparableComparator CompileAll ComponentData CompoundMapper Config ConfigurableServiceFactory ConfigurationException ConfigureByExample ConnectionClosedException ConnectionManager ConnectionManagerFactory ConnectionManagerUtil ConnectionParameters ConsoleProgressReporter ConstantMapper ContextData ContextIndex ContextKey ContextUtil ContextUtil.ContextResult ContextUtil.IsInContextFilter Controlled ConverterFactory Coordinate CountExpression CropStringMapper CustomRequestHandler Data DatabaseException DataCube DataCube.RawMappingQuery DataCubeColumn DataCubeColumnData DataCubeData DataCubeExtraValue DataCubeExtraValueData DataCubeFilter DataCubeFilterData DataCubeLayer DataCubeLayerData DataFileLoader DataFileType DataFileTypeData DataFileTypeInfo DataFileValidator DataLoader DataNoFunction DataParser DataQuery DataQueryWrapper DataResultIterator DataWriter DataWriterFactory DateFormatException DateFormatter DateParameterType DateParameterValueData DateUtil DateWriter DbControl DbControl.SaveIf DbEngine DbLogManager DbLogManagerFactory DebugOnSaveActionFactory DebugOnSaveActionFactory.DebugOnSaveAction DefaultConfigurationValues DefaultDbEngine DefaultEntityLogger DefaultFilter DefaultItemFunction DefaultRequestHandler DelegatingSignalHandler DeletedFilter DeleteResourcesProcessor DerivedBioAssay DerivedBioAssayData DerivedBioAssayImporter DerivedBioAssayLoader DerivedBioAssayValidator DescOrder DetachedItemException Diff3 DirectionalCacheKey Directory DirectoryData DisablePluginsProcessor DisallowedValueException DiskConsumable DiskConsumableData DiskFileWrapper DiskInputStreamLocator DiskUsage DiskUsageData DiskUsageStatistics DivideConverter DivideExpression DoubleParameterType DoubleParameterValueData DoubleWriter Download DropDynamicTableAction DummyJobExecutor DummyService DuplicateWizardException Dynamic DynamicExtraValueQuery DynamicField DynamicFilter DynamicJoin DynamicPositionQuery DynamicPositionQueryJoiners DynamicPositionQueryJoiners.ExtraValueJoiner DynamicPositionQueryJoiners.ReporterJoiner DynamicPositionQueryJoiners.ReporterListJoiner DynamicQuery DynamicQueryWrapper DynamicRawDataQuery DynamicReporterQuery DynamicReporterQuery.MasterReporterJoiner DynamicReporterQuery.ReporterListJoiner DynamicRestriction DynamicResultIterator DynamicSpotQuery DynamicSpotQueryJoiners DynamicSpotQueryJoiners.ExtraValueJoiner DynamicSpotQueryJoiners.RawDataJoiner DynamicSpotQueryJoiners.ReporterJoiner DynamicSpotQueryJoiners.ReporterListJoiner DynamicUtil DynamicUtil.SelectedInfo EditUtil EmailUtil EncoderDecoder EncodeUtil EngineFactory EnhancedThreadSignalHandler EntityDetails EntityLogger EntityQuery EntityQueryWrapper Enumeration Enumeration.Entry EqRestriction EqualsConverter EqualsFilter EqualsHelper ErrorHandler ErrorHandler ErrorHandlerFactory EventFilter EventHandler EventHandler EventType EventType EventTypeFilter ExceptionCatcher ExceptionInterruptHandler ExecuteUpdateWork ExpConverter Experiment ExperimentalFactorLoader ExperimentalFactorValidator ExperimentClient ExperimentData ExperimentExplorer ExperimentExplorer.AnnotationGroup ExperimentExplorer.AnnotationSummary ExperimentExplorer.InExpression ExperimentExplorer.ReporterPositions ExperimentExplorerPlotServlet ExperimentExplorerPlotServlet.ColumnKey ExperimentInfo ExperimentLoader ExperimentService ExperimentValidator ExpExpression ExportableField ExportableFieldConverter ExportableFieldFactory ExportableFieldFormatter ExportedProperty ExportOutputStream ExportTemplate Expression Expressions ExpressionSelect ExtendableData ExtendedProperties ExtendedProperty ExtendedPropertyAccessor ExtendedPropertyAccessor.GetterSetter ExtendedPropertyFormatter ExtendedPropertyInfo ExtendedPropertyLinker Extension ExtensionBean ExtensionContext ExtensionKey ExtensionPoint ExtensionPointBean ExtensionPointContext ExtensionPointEventFilter ExtensionPointFilter ExtensionPointKey ExtensionsControl ExtensionsFile ExtensionsFile.WriteableExtensionsFile ExtensionsFileProcessor ExtensionsFilter ExtensionsInvoker ExtensionsManager ExtensionsManager.JarFirstURIComparator ExtensionsServlet ExtensionsUtil ExternalProgramExecutor ExternalProgramExecutor.RequestWrapper ExternalProgramExecutor.ResponseWrapper Extract ExtractData ExtractImporter ExtractLoader ExtractNameGenerator ExtractResourcesProcessor ExtractToSampleTransformer ExtractValidator ExtractValidator.TagPosition ExtraFileImporter ExtraFloatParser ExtraValue ExtraValue.CoordinateType ExtraValueData ExtraValueExpression ExtraValueFunction ExtraValueJoin ExtraValueType ExtraValueTypeData Factories FactoryParametersKey Failure FallbackIdMethod Feature FeatureBatcher FeatureCoordinate FeatureData FeatureIdentificationMethod File File.Action FileAttachable FileAttachableData FileClient FileCopyRunnable FileData FileExportOutputStream FileImportInputStream FileInfo FilenameGenerator FileOnlyImporterSupport FilePacker FileParameterType FilePathFormatter FileServer FileServerData FileService FileSet FileSet.QueryRuntimeFilterImpl FileSetData FileSetMember FileSetMember.QueryRuntimeFilterImpl FileSetMemberData FileSetMemberInfo FileSetMemberLoader FileSetMemberLogger FileSetMemberNameGenerator FileStoreEnabled FileStoreEnabledData FileStoreUtil FileTypeIndex FileUnpacker FileUpload FileUpload.SectionHeaders FileUpload.UploadStatus FileUploadProgress FileUtil FileWrapper Filter FilterBatcher FilterUtil FirstPassSectionSpotsParser Fix FixedButtonFactory FixedMenuItemFactory FixedTabFactory FlatFileParser FlatFileParser.Data FlatFileParser.Line FlatFileParser.LineType FloatConverter FloatExpression FloatParameterType FloatParameterValueData FloatWriter Form Formatter FormatterFactory FormatterSettings Formula Formula.AverageMethod Formula.Parser Formula.Type FormulaData FormulaFilter ForwardingSignalHandler FunctionSafeJep FunctionSafeJep.SafeFunctionTable FunctionSafeJep.UnknownFunction GalExporter GenericBaseDataWriterFactory GenericDiskDataWriterFactory GenericExtraFileImporter GenericIntensityParser GenericOverview GeometricMeanExpression GlobalDefaultSetting GlobalDefaultSettingData GreaterConverter GreaterEqualsConverter Group Group.QueryRuntimeFilterImpl GroupData GroupGroups GroupKeys GroupPermissions GroupProjects GteqRestriction GtfInputStream GtfInputStream.Attribute GtfReporterImporter GtfReporterMapImporter GtfValidationAction GtfValidationFactory GtRestriction GuiContext GuiContext.Type GuiContextData GzipFilePacker Hardware HardwareData HardwareLoader HardwareValidator HasAnnotationRestriction HasAttributeFilter Head Header HeaderRow Headers Help Help HelpData HelpExporter HelpImporter HibernateUtil Hidden HideableSection HistogramPlot HistogramPlot.HistogramBin HistogramPlot.HistogramDataset HistogramPlot.HistogramSeries HistogramPlot.TempSeries HistogramPlot.YAggregate Hql HqlElementsExpression HqlEntityExpression HqlEntityParameterExpression HqlExpression HqlIndexExpression HqlInnerJoin HqlLeftJoin HqlPropertyExpression HqlQuery HqlQueryJoiners HqlQueryJoiners.ReporterListJoiner HqlRightJoin HqlSizeExpression HTML HttpConnectionManager HttpConnectionManager.CloseableHttpClient HttpConnectionManagerActionFactory HttpConnectionManagerFactory HttpUtil HybridizationImporter Icon Identifiable IdentifiableData IdentifiableFormatter IdentityEncoderDecoder IdentityFilter IdentityUnitConverter IdMethod IfConverter IlluminaRawDataImporter IlluminaRawDataImporter.BatchAndMapHolder ImmediateDownloadExporter ImportInputStream Include IncludeContentTabFactory IncludeExcludeFilter IndexedCacheKey InfoRequestHandler InputStreamCombiner InputStreamLocator InputStreamSplitter InputStreamTracker InReporterListFunction InRestriction Install Install.ItemSubtypeFT Install.PlatformFT InstalledFileProcessor InstalledFilter InstallFilter InstanceOfFilter IntegerConverter IntegerExpression IntegerFormatter IntegerParameterType IntegerParameterValueData IntegerUtil IntegerWriter IntensityCalculator IntensityCalculatorPlugin IntensityCalculatorUtil IntensityCalculatorUtil.JepIntensityCalculatorImpl IntensityFormula IntensityTransform InteractivePlugin InternalIdMethod InternalJobQueue InternalJobQueue.JobQueueKeyring InternalSlotManager InternalStorageController InternalStorageController.StorageKeyring InterruptHandler InvalidAndModifiedFilter InvalidAnnotationException InvalidDataException InvalidPasswordException InvalidPasswordException InvalidPathException InvalidRelationException InvalidUseOfNullException InverseFilter InvokationContext IOSupport Item Item.DefinedPermissions ItemAlreadyExistsException ItemContext ItemContext.PropertyFilterPair ItemContext.SortDirection ItemInUseException ItemKey ItemKeyData ItemModifiedException ItemNotFoundException ItemParameterType ItemParameterValueData ItemProxy ItemQuery ItemQueryLoader ItemQueryWrapper ItemResultIterator ItemResultList ItemSubtype ItemSubtypeData ItemSubtypeFileType ItemSubtypeFileTypeData ItemTypeFilter ItemTypeFormatter JarClassLoader JarClassLoader.JarInfo JdbcWork Jep JepConversionFunction JepDynamicField JepExpressionFunction JepExtraValueCalculator JepFunction JepIntensityTransformer JepMapper JepRestrictionFunction Job Job.ExecutionTime Job.ProgressReporterImpl Job.Status Job.Type JobAgent JobAgentConnection JobAgentData JobAgentInfo JobAgentServerConnection JobAgentServerConnection.ListenerThread JobAgentServerConnection.RequestHandlerThread JobAgentSettings JobAgentSettingsData JobData JobExecutor JobInfo JobQueueChecker JobRunner Join JoinType JspContext Key KeyData KeyPermission Keyring Label LabeledExtractImporter LeftFunction LessConverter LessEqualsConverter LikeRestriction LinearUnitConverter LineNoFunction ListUtil ListUtil LoadServletsProcessor LocalSignalReceiver LocalSignalTransporter Location Log2Function LogarithmConverter LogControl LogExpression LoggableData LoggingErrorHandlerFactory LoggingInterceptor LoginException LoginException LogManager LogManagerFactory LogUtil LongParameterType LongParameterValueData LongWriter LookupFormatter LowessNormalization LowessNormalization.CallableWorker LowessNormalization.SpotData LteqRestriction LtRestriction ManualDerivedBioAssayCreator ManualTransformCreator MAParser MAPlotFactory Mapper MappingBatcher MappingCoordinate MarkAsProcessedProcessor MasterSlotManager MasterSlotManager.RemoteSlot MasterSlotManager.RemoteSlotRequestHandler MasterSlotManager.RemoteSlotTimeoutChecker MatrixBaseFileExporter MatrixBfsExporter MatrixModel MatrixSpotIntensityEventHandler MaxExpression MD5 MeanExpression MeanFunction MeanRawDataPropertyExpression MeasuredBioMaterial MeasuredBioMaterialData MedianRatioNormalization MedianRatioNormalization.SpotData Menu Menuitem MenuItemAction MenuItemAction.MenuType MenuItemBean Menuseparator Message MessageData Metadata Metadata.BasicData2ItemPropertyPath Metadata.BasicItem2DataPropertyPath Metadata.CollectionPropertyPath Metadata.CombinedPropertyPath Metadata.ComponentPropertyPath Metadata.DateCopyPropertyPath Metadata.EntityPropertyPath Metadata.EvictPropertyPath Metadata.IdentifierPropertyPath Metadata.MapPropertyPath Metadata.NoopPropertyPath Metadata.PropertyPath Metadata.ReporterScore2DataPropertyPath MetadataModel MetadataModel.Section MetadataModel.SectionEntry MetadataParser MetadataWriter Migration MimeType MimeTypeData MinExpression ModeInfo MultiEventHandler MultiFormatter MultiPermissions MultiplyConverter MultiplyExpression MultiPropertyIdMethod MultiProtocolRequestHandler MultiStepCollectionTransformer MultiUpdateWork MySQLEngine Nameable NameableComparator NameableData NameableFormatter NameableInfo NameableNameGenerator NameableNodeValidator NameableUtil NamespaceParameterValuesWrapper NamespacePluginParameter NamespaceRequestWrapper NaturalLogarithmConverter Navigator NegateExpression NeqRestriction NestedIterator News News.QueryRuntimeFilterImpl NewsData Node Node.Type NodeAttribute NodeCache NodeFactory NodeLoader NodeLoaderFactory NodeNameGenerator NodeValidator NodeValidatorFactory NoneOfFilter NonRestartable NotConverter NotEqualsConverter NotInReporterListFunction NotLoggedInException NotNullFilter NotRestriction NullIfExceptionMapper NullNodeLoader NullNodeValidator NumberFormatter NumberFormatUtil NumberOutOfRangeException ObjectKey OlderThanFileFilter OneOfFilter OnSaveAction OnSaveRenderer Operator OrConverter Order Orders OrRestriction OverviewContext OverviewPlotAction OverviewPlotBean OverviewUtil Ownable OwnableData OwnableUtil OwnableUtil OwnedData OwnedItem OwnedItemInfo PackedFileExporter PackUtil Page Panel ParameterDefinition ParameterException ParameterExpression ParameterInfo Parameters ParameterType ParameterValueData ParameterValues ParameterValuesImpl ParameterValuesWrapper ParentBioMaterialEventSourceLoader ParentBioMaterialEventSourceLoaderFromBioAssay ParentBioMaterialLoader ParentsTransformer PasswordData Path Path Path.Type PathConverter PathElement PathParameterType PathSetter PathType PauseRequestHandler PerformanceTimer Permission PermissionButtonFactory PermissionDeniedException PermissionMenuItemFactory Permissions PermissionTemplate PermissionTemplateData PermissionUtil PhysicalBioAssay PhysicalBioAssayData PhysicalBioAssayImporter PhysicalBioAssayLoader PhysicalBioAssayValidator PingRequestHandler PlainTextTemplate Plate PlateCoordinate PlateData PlateEvent PlateEventData PlateEventLogger PlateEventType PlateEventTypeData PlateFlatFileImporter PlateGeometry PlateGeometryData PlateMapping PlateMappingData PlateMappingExporter PlateMappingImporter PlateType PlateTypeData Platform PlatformData PlatformFileType PlatformFileTypeData PlatformLoader PlatformValidator PlatformVariant PlatformVariantData PlotAnnotation PlotGenerator PlotGeneratorBean PlotServlet PlotServlet.CFResultIterator PlotServlet.CFSqlResult Plugin Plugin.MainType PluginConfiguration PluginConfigurationData PluginConfigurationExporter PluginConfigurationImporter PluginConfigurationRequest PluginDefinition PluginDefinitionData PluginDefinitionFilter PluginExecutionRequest PluginInfo PluginInfoKey PluginInstallationProcessor PluginKeys PluginParameter PluginPermission PluginPermission PluginRequest PluginResponse PluginSessionControl PluginType PluginTypeData POP3Authenticator PositionBatcher PositionEventHandler PositionExtraValueBatcher PositionFunction PostgresDbEngine PostgresResultWriterFactory PowerExpression PredefinedQuery PrefixSuffixFormatter PrefixSuffixRenderer Presets Presets.Preset PresetSelector PrintMapFlatFileImporter PrintMapFlatFileImporter.FormatType PrintMapFlatFileImporter.MetaBlock PrintMapFlatFileImporter.Section PriorityComparator ProcessJobExecutor ProcessJobExecutor.StreamRedirector ProcessResults ProcessResults.FileResults ProgramParameter ProgressReporter ProgressReporterSignalHandler Project Project.QueryRuntimeFilterImpl ProjectClient ProjectData ProjectInfo ProjectKey ProjectKeyData ProjectKeys ProjectPermission ProjectPermissions ProjectService PropertyFilter PropertyFilter PropertyFilterData PropertyIdMethod PropertyValue Protocol ProtocolData ProtocolLoader ProtocolParameterLoader ProtocolParameterValidator ProtocolValidator ProxyActionFactory QuadraticMeanExpression Quantity QuantityData Query QueryElement QueryExecutor QueryExecutor.Cancelable QueryExecutor.CancelableSession QueryExecutor.CancelableStatelessSession QueryExecutor.CancelableStatement QueryExecutor.FutureItem QueryExecutor.FutureResultSet QueryExecutor.FutureScrollIterator QueryExecutor.FutureUpdate QueryOptions QueryParameter QueryParameter QueryParameters QueryResult QueryRuntimeFilter QueryRuntimeFilterFactory QueryRuntimeFilterFactory.AnnotatableFilter QueryRuntimeFilterFactory.BasicFilter QueryRuntimeFilterFactory.ChainedFilter QueryRuntimeFilterFactory.ChildFilter QueryRuntimeFilterFactory.DenyAllFilter QueryRuntimeFilterFactory.OwnableFilter QueryRuntimeFilterFactory.RemovableFilter QueryRuntimeFilterFactory.ShareableFilter QueryRuntimeFilterManager QuerySection QueryType QueryWrapper QueryWrapper Quota Quota.QueryRuntimeFilterImpl QuotaData QuotaException QuotaIndex QuotaType QuotaTypeData RawBioAssay RawBioAssayClient RawBioAssayData RawBioAssayImporter RawBioAssayInfo RawBioAssayLoader RawBioAssayService RawBioAssayValidator RawChannelFunction RawData RawDataBatcher RawDataFlatFileImporter RawDataProperty RawDataPropertyExpression RawDataType RawDataTypes RawDataTypes.NameComparator RawDataUtil RawFunction RealJoin RealTable RegexpFileFilter Registered RegisteredData RegisterExtensionsProcessor RegisterExtensionsProcessor.FileData Registry Registry.AttributeKey Registry.RegisteredAbout Registry.RegisteredExtension Registry.RegisteredExtensionPoint RemoteSlotManager RemoteSlotManager.RemoteSlotPinger Removable RemovableData RemovableUtil RemoveAllTransformer Render Renderer RendererFactory Reporter ReporterBatcher ReporterClient ReporterCloneBatcher ReporterCloneBatcher.CloneSource ReporterClonePropertyData ReporterCloneTemplate ReporterCloneTemplateData ReporterData ReporterFlatFileImporter ReporterFunction ReporterList ReporterListData ReporterListExpression ReporterListInfo ReporterListJoin ReporterListScoreData ReporterMapFlatFileImporter ReporterPropertyExpression ReporterScore ReporterScoreQuery ReporterScoreQueryWrapper ReporterScoreResultIterator ReporterService ReporterType ReporterTypeData Request RequestHandler RequestInformation RequestWrapper ResetMetadataRenderer ResourceBundleFactory ResourceBundleWrapper Response Response.Status Restriction Restrictions ResultIterator ResultList ResultSetWork ResultWriter ResultWriterFactory RethrowErrorHandlerFactory RlikeRestriction Role Role.QueryRuntimeFilterImpl RoleData RoleKey RoleKeyData RoleKeys Row Rows RssNewsFeed Sample SampleData SampleImporter SampleLoader SampleToBioSourceTransformer SampleToExtractTransformer SampleValidator SavePointWork ScanImporter ScatterPlot Scheduler SchemaGenerator SchemaGenerator.Mode SchemaVersionData ScoreFunction Scripts ScrollIterator SecondaryStorageController SecondPassSectionSpotsParser SectionAssaysParser SectionReporterListParser Select Select SelectedExpression Selects SequenceFilenameGenerator SerialBaseFileExporter SerialBfsExporter SerialSpotIntensityEventHandler ServiceControllerAction ServiceFactory Services ServicesEventHandler ServicesUtil ServletExportOutputStream ServletLoader ServletWrapper ServletWrapperKey Session SessionClient SessionControl SessionControl.LoginInfo SessionControl.SettingInfo SessionData SessionService SessionWrapper Setting SettingData Settings Severity Shareable ShareableData ShareableUtil ShareableUtil SharedData SharedItem SharedItemInfo SharedToRestriction ShortWriter ShutdownSignalSender Signal SignalException SignalHandler SignalReceivedException SignalReceiver SignalRequestHandler SignalSender SignalTarget SignalTransporter SimpleAbsoluteProgressReporter SimpleAuthenticator SimpleDynamicField SimpleErrorHandler SimpleExport SimpleProgressReporter SimpleSignalProgressReporter SimpleSignalSender SingleExtensionFilter SingleFileValidationAction Slot SlotManager SnapshotManager SocketSignalReceiver SocketSignalTransporter SocketUtil Software SoftwareData SoftwareLoader SoftwareValidator SpecialQuery SpotBatcher SpotExtraValueBatcher SpotImage SpotImageCreator SpotImageFormatter SpotImages SpotImagesData SpotIntensityParser SqlColumnExpression SqlQuery SqlResult SqlResultIterator SqlResultList SqrtExpression SquareRootConverter SSLUtil StandardFieldConverter StartRequestHandler StartServiceRenderer StartStopServlet StatelessSessionWrapper StaticCache StaticCache.CleanupTask StaticCache.LockEntry StaticCache.LockSafeInputStream StaticCache.LockSafeOutputStream StaticFilter StaticKeyManager StopRequestHandler StopServiceRenderer StreamCacher StringConverter StringConverter StringFormatter StringLengthComparator StringMatcher StringMatcher.FuzzyMatch StringParameterType StringParameterValueData StringTooLongException StringUtil StylableTag Stylesheets Submenu SubqueryExpression SubtractConverter SubtractExpression Subtypable SubtypableData SubtypableRelatedItems SuggestedFilenameGenerator SumExpression SupportsPushAnnotations SynchronizedSpotDataParser SynchronizedSpotDataParser.SynchronizedData SystemData SystemItem SystemItems Tab TabAction TabBean TabControl TabCrLfEncoderDecoder Table TableColumn TableExistsWork TableInfo TableInfo.ColumnInfo TableInfo.ForeignKeyInfo TableInfo.IndexInfo TableInfo.PrimaryKeyInfo TableInfoWork TableWriter Tag TagData TagLoader TagValidator TarFilePacker TarFileUnpacker TarUtil TempFileDataSource TextParameterValueData TextWriter ThreadJobExecutor ThreadJobExecutor.ShutdownHook ThreadSignalHandler ThreadTimerTask ThrowableUtil TimestampParameterType TimestampParameterValueData TimestampWriter ToDateExpression Toolbar ToolbarButtonRenderer ToolbarButtonRendererFactory ToolbarUtil ToSpaceEncoderDecoder ToStringComparator ToStringFormatter ToTransferable Transactional Transactional.Action TransactionalAction TransactionDetails Transferable Transformation TransformationData Transformer Trashcan Tree Tree.Entry Type TypeWrapper UMinusConverter UninstalledFileProcessor UninstallFilter Unit UnitCache UnitCache.CacheKey UnitConverter UnitData UnitSymbolData UnitUtil UnknownLoginException UnmodifiableResultList UnregisterExtensionsProcessor UnsavedItemException UnsupportedFileFormatException UnsupportedSignalException Update Upload UploadAbortedException UploadedFile UriMetadata UsableDataFileType User User.QueryRuntimeFilterImpl UserClientSetting UserClientSettingData UserData UserDefaultSetting UserDefaultSettingData UserGroups UserKeys UserPermissions UserProjects UserRoles Utf8PropertiesResourceBundleControl ValidAndNewOrModifiedFilter Validatable ValidatingFileSetMember ValidationAction ValidationOptions ValidationRenderer Validator ValueConverter Values Values VariableConverter VariableSetter Version VersionedParameter VersionInfo ViewSpotImage VirtualColumn VirtualColumnExpression VirtualColumnExpression.WrappedExpression VirtualDb VirtualDbData VirtualTable WasProcessedFilter WebClientRegisterExtensionsProcessor WebException Well WellCoordinateFormatter WellData WhenStatement WrappedConfigureByExample WrappingRenderer XJspCompiler XmlLoader XMLTemplate XMLUtil XMLUtil.Validator ZipFilePacker ZipFileUnpacker ZipUnpacker