net.sf.basedb.core.data
Class BioMaterialData

java.lang.Object
  net.sf.basedb.core.data.BasicData
      net.sf.basedb.core.data.OwnedData
          net.sf.basedb.core.data.SharedData
              net.sf.basedb.core.data.CommonData
                  net.sf.basedb.core.data.AnnotatedData
                      net.sf.basedb.core.data.BioMaterialData

All Implemented Interfaces:

AnnotatableData, IdentifiableData, LoggableData, NameableData, OwnableData, RemovableData, ShareableData

Direct Known Subclasses:

BioSourceData, MeasuredBioMaterialData

public abstract class BioMaterialData
extends AnnotatedData

This class is the root class for biomaterials.

Version:

2.0

Author:

Nicklas

See Also:

BioMaterial, Biomaterials overview

Last modified

$Date: 2009-04-06 14:52:39 +0200 (Mon, 06 Apr 2009) $

Hibernate: class

table="`BioMaterials`" lazy="false" discriminator-value="-1"

Hibernate: discriminator

column="`discriminator`" type="int"

Field Summary

private Set<MeasuredBioMaterialData>	children
private String	externalId
private Set<BioMaterialListData>	lists
static int	MAX_EXTERNAL_ID_LENGTH The maximum length of the external id that can be stored in the database.

Fields inherited from interface net.sf.basedb.core.data.NameableData

MAX_DESCRIPTION_LENGTH, MAX_NAME_LENGTH

Constructor Summary

BioMaterialData()

Method Summary

(package private) Set<BioMaterialListData>	getBioMaterialLists() This is the inverse end.
(package private) Set<MeasuredBioMaterialData>	getChildren() This is the inverse end.
String	getExternalId() Get the external id for the biomaterial
(package private) void	setBioMaterialLists(Set<BioMaterialListData> lists)
(package private) void	setChildren(Set<MeasuredBioMaterialData> children)
void	setExternalId(String externalId)

Methods inherited from class net.sf.basedb.core.data.AnnotatedData

getAnnotationSet, setAnnotationSet

Methods inherited from class net.sf.basedb.core.data.CommonData

getDescription, getName, isRemoved, setDescription, setName, setRemoved

Methods inherited from class net.sf.basedb.core.data.SharedData

getItemKey, getProjectKey, setItemKey, setProjectKey

Methods inherited from class net.sf.basedb.core.data.OwnedData

getOwner, setOwner

Methods inherited from class net.sf.basedb.core.data.BasicData

equals, getId, getVersion, hashCode, setId, setVersion, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.sf.basedb.core.data.IdentifiableData

getId, getVersion

Methods inherited from interface net.sf.basedb.core.data.OwnableData

getOwner, setOwner

Field Detail

MAX_EXTERNAL_ID_LENGTH

public static final int MAX_EXTERNAL_ID_LENGTH

The maximum length of the external id that can be stored in the database.

See Also:

setExternalId(String), Constant Field Values

externalId

private String externalId

children

private Set<MeasuredBioMaterialData> children

lists

private Set<BioMaterialListData> lists

Constructor Detail

BioMaterialData

public BioMaterialData()

Method Detail

getExternalId

public String getExternalId()

Get the external id for the biomaterial

Hibernate: property

column="`external_id`" type="string" length="255" not-null="false"

setExternalId

public void setExternalId(String externalId)

getChildren

Set<MeasuredBioMaterialData> getChildren()

This is the inverse end. NOTE! This collection will not contained pooled children or hybridizations.

Since:

2.9

See Also:

MeasuredBioMaterialData.getParent()

Hibernate: set

inverse="true" lazy="true"

Hibernate: collection-key

column="`parent_id`"

Hibernate: collection-one-to-many

class="net.sf.basedb.core.data.MeasuredBioMaterialData"

setChildren

void setChildren(Set<MeasuredBioMaterialData> children)

getBioMaterialLists

Set<BioMaterialListData> getBioMaterialLists()

This is the inverse end. NOTE! We do not map with inverse="true" since we want automatic deletion from the join table when a biomaterial is deleted.

Since:

2.10

See Also:

BioMaterialListData.getBioMaterials()

Hibernate: set

lazy="true" table="`BioMaterialListMembers`"

Hibernate: collection-key

column="`biomaterial_id`"

Hibernate: collection-many-to-many

column="`list_id`" class="net.sf.basedb.core.data.BioMaterialListData"

setBioMaterialLists

void setBioMaterialLists(Set<BioMaterialListData> lists)