Ticket #1238: reference-times-grey.txt

Tests was done on a dedicated performance test machine (grey). 
Results should not be compared to results made on other computers.

The test was made on a fresh installation of BASE 2.11 on 
MySQL 5.0.51a which was initialised with 1000 raw data sets 
following the instructions in
http://base.thep.lu.se/wiki/Specifications/Test_procedures/Performance
Eg. './test.sh performance -i 1000 raw'

The following tests were made from the web interface. The 
main purpose of the tests are to keep the result as a reference 
to make sure that any improvements we can do in the 
BioAssaySetExporter doesn't affect other things.

# = Number of assays
T1 = First run
T2 = Second run

Create root bioassay set
========================
formula: Mean FG - Median BG

#   T1  T2
--------------------
10  0.41  0.20
20  1.10  1.17
40  3.57  2.44
80  6.045 7.33
160 18.42 13.39
320 31.45 36.57
640 71.07 78.37


Filter bioassay set
===================
formula: ch(1) > 0 && ch(2) > 0

# T1  T2
--------------------
10  0.31  0.26
20  0.46  0.41
40  1.27  1.17
80  1.42  2.39
160 4.41  5.10
320 12.55 12.18
640 23.45 25.05

Lowess normalization
====================
all parameters at default values

# T1  T2
--------------------
10  2.42  1.49
20  3.16  2.57
40  5.15  4.55
80  13.41 14.17
160 32.16 25.01
320 59.55 52.20